Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col3a1P08121 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Col3a1P08121 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col3a1P08121 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Col3a1P08121 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col3a1P08121 Gm17807-201ENSMUST00000186869 298 ntBASIC20.62■□□□□ 0.89
Col3a1P08121 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col3a1P08121 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC20.62■□□□□ 0.89
Col3a1P08121 Gm18669-201ENSMUST00000216049 778 ntBASIC20.62■□□□□ 0.89
Col3a1P08121 AC122351.1-201ENSMUST00000220467 126 ntBASIC20.62■□□□□ 0.89
Col3a1P08121 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col3a1P08121 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Col3a1P08121 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col3a1P08121 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col3a1P08121 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col3a1P08121 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col3a1P08121 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Col3a1P08121 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col3a1P08121 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col3a1P08121 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC20.61■□□□□ 0.89
Col3a1P08121 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Col3a1P08121 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col3a1P08121 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col3a1P08121 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Col3a1P08121 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC20.6■□□□□ 0.89
Col3a1P08121 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col3a1P08121 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Col3a1P08121 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC20.59■□□□□ 0.89
Col3a1P08121 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC20.59■□□□□ 0.89
Col3a1P08121 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Col3a1P08121 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC20.59■□□□□ 0.89
Col3a1P08121 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.59■□□□□ 0.89
Col3a1P08121 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.59■□□□□ 0.89
Col3a1P08121 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC20.59■□□□□ 0.89
Col3a1P08121 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Col3a1P08121 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Col3a1P08121 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
Col3a1P08121 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col3a1P08121 Gm27742-201ENSMUST00000184667 60 ntBASIC20.58■□□□□ 0.89
Col3a1P08121 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col3a1P08121 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
Col3a1P08121 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col3a1P08121 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
Col3a1P08121 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col3a1P08121 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Col3a1P08121 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col3a1P08121 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC20.57■□□□□ 0.88
Col3a1P08121 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Col3a1P08121 Gm6623-201ENSMUST00000173570 544 ntBASIC20.57■□□□□ 0.88
Col3a1P08121 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.57■□□□□ 0.88
Col3a1P08121 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col3a1P08121 Rarb-207ENSMUST00000225921 2756 ntBASIC20.57■□□□□ 0.88
Col3a1P08121 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col3a1P08121 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col3a1P08121 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.57■□□□□ 0.88
Col3a1P08121 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC20.57■□□□□ 0.88
Col3a1P08121 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col3a1P08121 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col3a1P08121 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col3a1P08121 Gm6190-201ENSMUST00000220683 1374 ntBASIC20.57■□□□□ 0.88
Col3a1P08121 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Col3a1P08121 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col3a1P08121 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col3a1P08121 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col3a1P08121 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col3a1P08121 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC20.56■□□□□ 0.88
Col3a1P08121 Otx2os1-206ENSMUST00000228153 787 ntBASIC20.56■□□□□ 0.88
Col3a1P08121 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col3a1P08121 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col3a1P08121 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col3a1P08121 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC20.56■□□□□ 0.88
Col3a1P08121 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col3a1P08121 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col3a1P08121 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms