Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Zfp783-201ENSMUST00000095946 670 ntBASIC16.45■□□□□ 0.22
Clk3O35492 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC16.45■□□□□ 0.22
Clk3O35492 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Clk3O35492 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
Clk3O35492 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Clk3O35492 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Clk3O35492 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Clk3O35492 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Clk3O35492 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Clk3O35492 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Clk3O35492 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Clk3O35492 Gm38285-201ENSMUST00000192928 922 ntBASIC16.44■□□□□ 0.22
Clk3O35492 CT025689.6-201ENSMUST00000224991 1104 ntBASIC16.44■□□□□ 0.22
Clk3O35492 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Clk3O35492 Idnk-204ENSMUST00000226010 1898 ntBASIC16.44■□□□□ 0.22
Clk3O35492 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Clk3O35492 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
Clk3O35492 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.43■□□□□ 0.22
Clk3O35492 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC16.43■□□□□ 0.22
Clk3O35492 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC16.43■□□□□ 0.22
Clk3O35492 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC16.43■□□□□ 0.22
Clk3O35492 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
Clk3O35492 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
Clk3O35492 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Clk3O35492 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Clk3O35492 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC16.42■□□□□ 0.22
Clk3O35492 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC16.42■□□□□ 0.22
Clk3O35492 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk3O35492 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk3O35492 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk3O35492 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk3O35492 Gm20049-201ENSMUST00000219950 730 ntBASIC16.42■□□□□ 0.22
Clk3O35492 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC16.42■□□□□ 0.22
Clk3O35492 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk3O35492 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk3O35492 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Clk3O35492 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Clk3O35492 Gm21596-201ENSMUST00000178049 1316 ntBASIC16.42■□□□□ 0.22
Clk3O35492 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk3O35492 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Clk3O35492 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Gm37812-201ENSMUST00000195216 2475 ntBASIC16.41■□□□□ 0.22
Clk3O35492 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Clk3O35492 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Gm11927-201ENSMUST00000118472 759 ntBASIC16.41■□□□□ 0.22
Clk3O35492 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC16.41■□□□□ 0.22
Clk3O35492 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Dio3-201ENSMUST00000097228 1449 ntBASIC16.41■□□□□ 0.22
Clk3O35492 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Clk3O35492 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC16.4■□□□□ 0.22
Clk3O35492 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk3O35492 Gm44544-201ENSMUST00000207052 1844 ntBASIC16.4■□□□□ 0.22
Clk3O35492 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk3O35492 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC16.4■□□□□ 0.22
Clk3O35492 Spcs1-207ENSMUST00000228767 1008 ntBASIC16.4■□□□□ 0.22
Clk3O35492 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk3O35492 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk3O35492 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk3O35492 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk3O35492 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk3O35492 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Clk3O35492 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Clk3O35492 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC16.39■□□□□ 0.21
Clk3O35492 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk3O35492 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Clk3O35492 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Clk3O35492 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Clk3O35492 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Clk3O35492 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms