Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Trav11A0A0B4J1J9 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Trav11A0A0B4J1J9 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Trav11A0A0B4J1J9 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Trav11A0A0B4J1J9 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Trav11A0A0B4J1J9 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Trav11A0A0B4J1J9 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Gm6420-201ENSMUST00000193885 723 ntBASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Chn1-203ENSMUST00000112024 4050 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Chn1-210ENSMUST00000180045 4050 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Trav11A0A0B4J1J9 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Pcdha9-201ENSMUST00000115659 5341 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Nespas-201ENSMUST00000143738 1083 ntBASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Gm21168-201ENSMUST00000199646 1096 ntBASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Gm45774-201ENSMUST00000211992 2665 ntBASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
Trav11A0A0B4J1J9 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms