Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 5730507A11Rik-201ENSMUST00000204297 3371 ntBASIC4.22□□□□□ -1.73
CtcfQ61164 AU041133-201ENSMUST00000105314 1494 ntTSL 5 BASIC4.22□□□□□ -1.73
CtcfQ61164 Csnka2ip-202ENSMUST00000209382 2859 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CtcfQ61164 Olfr358-202ENSMUST00000216437 4962 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
CtcfQ61164 Atad1-201ENSMUST00000070210 2813 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CtcfQ61164 Vmn2r93-201ENSMUST00000079206 2574 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
CtcfQ61164 Cbll1-204ENSMUST00000185739 3945 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.73
CtcfQ61164 Olfr801-204ENSMUST00000216067 4014 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.73
CtcfQ61164 Olfr1093-203ENSMUST00000219561 2124 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CtcfQ61164 Clhc1-201ENSMUST00000020753 2200 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
CtcfQ61164 Gm22591-201ENSMUST00000104243 106 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Olfr596-201ENSMUST00000104880 939 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CtcfQ61164 Gm11913-201ENSMUST00000119094 336 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm14875-201ENSMUST00000120881 319 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm11260-201ENSMUST00000121163 942 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm23957-201ENSMUST00000157209 90 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm22211-201ENSMUST00000158097 156 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm23025-201ENSMUST00000158769 111 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm25369-201ENSMUST00000158848 132 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Vmn1r115-201ENSMUST00000169374 888 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CtcfQ61164 Gm19203-201ENSMUST00000174049 939 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Fam107b-206ENSMUST00000176254 300 ntTSL 5 BASIC4.21□□□□□ -1.74
CtcfQ61164 Mup-ps7-201ENSMUST00000178292 545 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Mup-ps8-201ENSMUST00000178663 545 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Mup-ps9-201ENSMUST00000178847 545 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Mup-ps6-201ENSMUST00000179564 545 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm29327-201ENSMUST00000188229 388 ntTSL 5 BASIC4.21□□□□□ -1.74
CtcfQ61164 1700001D01Rik-201ENSMUST00000188654 565 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CtcfQ61164 Gm8403-201ENSMUST00000189712 1298 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm28414-201ENSMUST00000190111 294 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm42622-201ENSMUST00000197229 355 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm43140-201ENSMUST00000197317 456 ntTSL 2 BASIC4.21□□□□□ -1.74
CtcfQ61164 Gm43578-201ENSMUST00000201250 459 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 4930404I20Rik-201ENSMUST00000203246 498 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CtcfQ61164 Gm45031-201ENSMUST00000206800 288 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm29920-201ENSMUST00000206876 754 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm44961-201ENSMUST00000207450 196 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Olfr837-201ENSMUST00000212482 1040 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CtcfQ61164 AC160123.1-201ENSMUST00000213443 570 ntTSL 5 BASIC4.21□□□□□ -1.74
CtcfQ61164 Gm35262-201ENSMUST00000215133 267 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 AC157017.1-201ENSMUST00000220148 364 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 AC166056.1-201ENSMUST00000223139 441 ntTSL 5 BASIC4.21□□□□□ -1.74
CtcfQ61164 AC165146.1-201ENSMUST00000223777 900 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 AC131085.1-201ENSMUST00000224746 656 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 AC155314.1-201ENSMUST00000227624 508 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Samt4-201ENSMUST00000026029 963 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CtcfQ61164 Gm24921-201ENSMUST00000083024 107 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm21286-201ENSMUST00000098035 545 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Olfr1282-201ENSMUST00000099618 918 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
CtcfQ61164 Olfr1255-202ENSMUST00000214508 2253 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CtcfQ61164 Olfr1150-ps1-201ENSMUST00000121186 3311 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CtcfQ61164 Gm43923-201ENSMUST00000203992 2911 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Gm44708-201ENSMUST00000205580 2237 ntBASIC4.21□□□□□ -1.74
CtcfQ61164 Olfr301-201ENSMUST00000174362 1937 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
CtcfQ61164 AC153563.1-202ENSMUST00000217695 1838 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CtcfQ61164 Hmgb1-203ENSMUST00000110505 1720 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CtcfQ61164 Zfp72-201ENSMUST00000091481 1629 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CtcfQ61164 D730048I06Rik-201ENSMUST00000034619 1334 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CtcfQ61164 Gm44164-201ENSMUST00000203605 2561 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm29515-201ENSMUST00000188273 2077 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CtcfQ61164 Gm11284-201ENSMUST00000121910 1887 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 AC154323.3-201ENSMUST00000226927 1660 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Vmn1r18-202ENSMUST00000228574 14315 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CtcfQ61164 Srek1-204ENSMUST00000210489 6330 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CtcfQ61164 Olfr1274-ps-202ENSMUST00000216111 3395 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CtcfQ61164 Gm29730-201ENSMUST00000192986 1396 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm24831-201ENSMUST00000116778 126 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm14981-201ENSMUST00000117325 943 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm9308-201ENSMUST00000119073 448 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm15313-201ENSMUST00000119179 282 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm13751-201ENSMUST00000120280 752 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm13339-201ENSMUST00000120651 510 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm6568-201ENSMUST00000122274 697 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm23885-201ENSMUST00000122682 294 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm28039-201ENSMUST00000149128 254 ntTSL 3 BASIC4.2□□□□□ -1.74
CtcfQ61164 Sult2a4-202ENSMUST00000165167 964 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
CtcfQ61164 Vmn1r-ps84-201ENSMUST00000172853 923 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Vmn2r-ps62-201ENSMUST00000174119 616 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm20701-201ENSMUST00000176082 347 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm14419-204ENSMUST00000178182 192 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CtcfQ61164 Gm2004-202ENSMUST00000178872 192 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CtcfQ61164 Gm14295-203ENSMUST00000179435 192 ntTSL 5 BASIC4.2□□□□□ -1.74
CtcfQ61164 Gm7497-201ENSMUST00000183064 1003 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm29413-201ENSMUST00000186019 880 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm28870-201ENSMUST00000187033 880 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CtcfQ61164 Gm29639-201ENSMUST00000188375 580 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm37300-201ENSMUST00000193327 280 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm38332-201ENSMUST00000194189 147 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm4644-201ENSMUST00000197587 400 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Trav15d-3-201ENSMUST00000198604 167 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm32772-201ENSMUST00000205898 594 ntTSL 3 BASIC4.2□□□□□ -1.74
CtcfQ61164 2500002B13Rik-202ENSMUST00000210752 298 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CtcfQ61164 Rpl26-ps1-201ENSMUST00000213139 426 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm46124-201ENSMUST00000215223 808 ntTSL 5 BASIC4.2□□□□□ -1.74
CtcfQ61164 AC132384.9-201ENSMUST00000218085 277 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm8249-201ENSMUST00000219225 465 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 Gm8274-201ENSMUST00000219820 463 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 AC125531.1-201ENSMUST00000219849 221 ntBASIC4.2□□□□□ -1.74
CtcfQ61164 AC123705.4-201ENSMUST00000222411 493 ntTSL 3 BASIC4.2□□□□□ -1.74
CtcfQ61164 AC124569.1-201ENSMUST00000225932 101 ntBASIC4.2□□□□□ -1.74
Retrieved 100 of 76,532 protein–RNA pairs in 77.4 ms