Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn11aQ9R053 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Scn11aQ9R053 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn11aQ9R053 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn11aQ9R053 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn11aQ9R053 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC20.54■□□□□ 0.88
Scn11aQ9R053 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC20.54■□□□□ 0.88
Scn11aQ9R053 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC20.54■□□□□ 0.88
Scn11aQ9R053 AC125350.1-201ENSMUST00000225115 903 ntBASIC20.54■□□□□ 0.88
Scn11aQ9R053 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn11aQ9R053 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn11aQ9R053 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC20.53■□□□□ 0.88
Scn11aQ9R053 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Scn11aQ9R053 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Scn11aQ9R053 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC20.53■□□□□ 0.88
Scn11aQ9R053 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Scn11aQ9R053 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn11aQ9R053 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn11aQ9R053 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC20.52■□□□□ 0.88
Scn11aQ9R053 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Scn11aQ9R053 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC20.52■□□□□ 0.88
Scn11aQ9R053 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC20.52■□□□□ 0.88
Scn11aQ9R053 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC20.52■□□□□ 0.88
Scn11aQ9R053 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn11aQ9R053 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn11aQ9R053 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Scn11aQ9R053 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC20.52■□□□□ 0.88
Scn11aQ9R053 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn11aQ9R053 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.5■□□□□ 0.87
Scn11aQ9R053 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 Gm34391-201ENSMUST00000203706 907 ntBASIC20.5■□□□□ 0.87
Scn11aQ9R053 Gm18421-201ENSMUST00000204122 625 ntBASIC20.5■□□□□ 0.87
Scn11aQ9R053 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Scn11aQ9R053 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Gm13186-201ENSMUST00000118031 316 ntBASIC20.49■□□□□ 0.87
Scn11aQ9R053 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Gm18115-201ENSMUST00000221209 621 ntBASIC20.49■□□□□ 0.87
Scn11aQ9R053 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Scn11aQ9R053 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Phf7-203ENSMUST00000226565 1971 ntBASIC20.49■□□□□ 0.87
Scn11aQ9R053 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Scn11aQ9R053 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms