Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Ube3bQ9ES34 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Gm10013-201ENSMUST00000106074 672 ntBASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Gm22697-201ENSMUST00000175194 63 ntBASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Mir1668-201ENSMUST00000184114 107 ntBASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ube3bQ9ES34 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ube3bQ9ES34 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Gm18101-201ENSMUST00000215769 548 ntBASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
Ube3bQ9ES34 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Gm7213-201ENSMUST00000215977 950 ntBASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ube3bQ9ES34 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 AC154855.1-201ENSMUST00000227353 1458 ntBASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ube3bQ9ES34 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Ube3bQ9ES34 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC20.52■□□□□ 0.88
Ube3bQ9ES34 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ube3bQ9ES34 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ube3bQ9ES34 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ube3bQ9ES34 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ube3bQ9ES34 Gm18958-201ENSMUST00000174258 762 ntBASIC20.52■□□□□ 0.88
Ube3bQ9ES34 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Ube3bQ9ES34 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ube3bQ9ES34 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ube3bQ9ES34 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Ube3bQ9ES34 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ube3bQ9ES34 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ube3bQ9ES34 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ube3bQ9ES34 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ube3bQ9ES34 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ube3bQ9ES34 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ube3bQ9ES34 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ube3bQ9ES34 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC20.51■□□□□ 0.87
Ube3bQ9ES34 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
Ube3bQ9ES34 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms