Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Ddx56Q9D0R4 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Gm24841-201ENSMUST00000158676 357 ntBASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ddx56Q9D0R4 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Gm27011-201ENSMUST00000182352 972 ntBASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ddx56Q9D0R4 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ddx56Q9D0R4 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.14■□□□□ 0.5
Ddx56Q9D0R4 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ddx56Q9D0R4 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ddx56Q9D0R4 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Ddx56Q9D0R4 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 AC175538.1-201ENSMUST00000225343 1269 ntBASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 AC154649.1-201ENSMUST00000227392 384 ntBASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 Gm43338-201ENSMUST00000198617 2223 ntBASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ddx56Q9D0R4 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx56Q9D0R4 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx56Q9D0R4 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Ddx56Q9D0R4 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx56Q9D0R4 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx56Q9D0R4 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ddx56Q9D0R4 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms