Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Smc1aQ9CU62 Gm43338-201ENSMUST00000198617 2223 ntBASIC19.33■□□□□ 0.69
Smc1aQ9CU62 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Smc1aQ9CU62 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Smc1aQ9CU62 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Smc1aQ9CU62 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Smc1aQ9CU62 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Mir5122-201ENSMUST00000175004 89 ntBASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Smc1aQ9CU62 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.32■□□□□ 0.68
Smc1aQ9CU62 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Gm20472-201ENSMUST00000174403 1240 ntBASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 AC153881.2-201ENSMUST00000214877 204 ntBASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Gm9987-201ENSMUST00000069768 567 ntBASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Smc1aQ9CU62 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 AC121577.1-201ENSMUST00000227302 707 ntBASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Smc1aQ9CU62 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Smc1aQ9CU62 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms