Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Lsm1Q8VC85 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Gm10602-201ENSMUST00000098239 609 ntBASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Lsm1Q8VC85 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Lsm1Q8VC85 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
Lsm1Q8VC85 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Lsm1Q8VC85 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Lsm1Q8VC85 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 AC164629.5-201ENSMUST00000220387 632 ntBASIC16.58■□□□□ 0.24
Lsm1Q8VC85 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Ddx41-204ENSMUST00000224765 2199 ntBASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Lsm1Q8VC85 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Lsm1Q8VC85 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 AC166341.7-201ENSMUST00000221698 126 ntBASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Lsm1Q8VC85 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms