Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Gm5867-201ENSMUST00000063197 592 ntBASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Snrnp40Q6PE01 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Snrnp40Q6PE01 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Snrnp40Q6PE01 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Snrnp40Q6PE01 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Snrnp40Q6PE01 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Mir8098-201ENSMUST00000184011 137 ntBASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Gm27459-201ENSMUST00000184860 107 ntBASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Gm43213-201ENSMUST00000151866 1790 ntBASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Snrnp40Q6PE01 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Snrnp40Q6PE01 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Gm38342-201ENSMUST00000195710 2980 ntBASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Gm43347-201ENSMUST00000200226 580 ntBASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 AC124569.2-201ENSMUST00000225998 818 ntBASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Fst-202ENSMUST00000223640 2612 ntBASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Snrnp40Q6PE01 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Gm13884-201ENSMUST00000118103 829 ntBASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Snrnp40Q6PE01 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 44.6 ms