Protein–RNA interactions for Protein: Q6IRU2

Tpm4, Tropomyosin alpha-4 chain, mousemouse

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm4Q6IRU2 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC19.39■□□□□ 0.69
Tpm4Q6IRU2 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Tpm4Q6IRU2 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Tpm4Q6IRU2 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Tpm4Q6IRU2 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Tpm4Q6IRU2 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Tpm4Q6IRU2 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Tpm4Q6IRU2 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Tpm4Q6IRU2 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Tpm4Q6IRU2 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Tpm4Q6IRU2 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Tpm4Q6IRU2 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Tpm4Q6IRU2 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Tpm4Q6IRU2 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Tpm4Q6IRU2 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Tpm4Q6IRU2 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Tpm4Q6IRU2 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Tpm4Q6IRU2 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Tpm4Q6IRU2 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Gm43808-201ENSMUST00000202534 2065 ntBASIC19.36■□□□□ 0.69
Tpm4Q6IRU2 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Gm10418-201ENSMUST00000100943 576 ntBASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Gm38285-201ENSMUST00000192928 922 ntBASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Tpm4Q6IRU2 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Gm28265-201ENSMUST00000188201 2319 ntBASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Tpm4Q6IRU2 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Tpm4Q6IRU2 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Tpm4Q6IRU2 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Tpm4Q6IRU2 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Tpm4Q6IRU2 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
Tpm4Q6IRU2 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Tpm4Q6IRU2 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Tpm4Q6IRU2 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms