Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trim28Q62318 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
Trim28Q62318 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Trim28Q62318 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trim28Q62318 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trim28Q62318 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC22.56■■□□□ 1.2
Trim28Q62318 Gm7367-201ENSMUST00000057611 492 ntBASIC22.56■■□□□ 1.2
Trim28Q62318 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Trim28Q62318 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trim28Q62318 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC22.56■■□□□ 1.2
Trim28Q62318 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Trim28Q62318 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trim28Q62318 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trim28Q62318 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trim28Q62318 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trim28Q62318 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Trim28Q62318 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Trim28Q62318 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
Trim28Q62318 Gm11860-201ENSMUST00000122346 1010 ntBASIC22.55■■□□□ 1.2
Trim28Q62318 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trim28Q62318 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trim28Q62318 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
Trim28Q62318 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trim28Q62318 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
Trim28Q62318 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Trim28Q62318 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC22.55■■□□□ 1.2
Trim28Q62318 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC22.54■■□□□ 1.2
Trim28Q62318 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC22.54■■□□□ 1.2
Trim28Q62318 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC22.54■■□□□ 1.2
Trim28Q62318 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trim28Q62318 Zcchc6-207ENSMUST00000225576 2499 ntBASIC22.54■■□□□ 1.2
Trim28Q62318 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC22.54■■□□□ 1.2
Trim28Q62318 Gm37722-201ENSMUST00000193757 208 ntBASIC22.54■■□□□ 1.2
Trim28Q62318 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Trim28Q62318 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trim28Q62318 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Trim28Q62318 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trim28Q62318 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trim28Q62318 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
Trim28Q62318 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC22.54■■□□□ 1.2
Trim28Q62318 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Trim28Q62318 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
Trim28Q62318 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trim28Q62318 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Trim28Q62318 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC22.53■■□□□ 1.2
Trim28Q62318 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC22.53■■□□□ 1.2
Trim28Q62318 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC22.53■■□□□ 1.2
Trim28Q62318 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC22.53■■□□□ 1.2
Trim28Q62318 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trim28Q62318 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Trim28Q62318 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Trim28Q62318 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trim28Q62318 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
Trim28Q62318 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC22.53■■□□□ 1.2
Trim28Q62318 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
Trim28Q62318 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trim28Q62318 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC22.53■■□□□ 1.2
Trim28Q62318 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Trim28Q62318 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC22.53■■□□□ 1.2
Trim28Q62318 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC22.52■■□□□ 1.2
Trim28Q62318 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC22.52■■□□□ 1.2
Trim28Q62318 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trim28Q62318 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trim28Q62318 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Trim28Q62318 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trim28Q62318 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trim28Q62318 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trim28Q62318 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trim28Q62318 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
Trim28Q62318 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trim28Q62318 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Trim28Q62318 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.19
Trim28Q62318 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Trim28Q62318 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Trim28Q62318 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Trim28Q62318 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim28Q62318 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
Trim28Q62318 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC22.51■■□□□ 1.19
Trim28Q62318 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC22.51■■□□□ 1.19
Trim28Q62318 Gm17808-201ENSMUST00000200859 894 ntBASIC22.51■■□□□ 1.19
Trim28Q62318 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim28Q62318 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
Trim28Q62318 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim28Q62318 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
Trim28Q62318 Tfap2a-209ENSMUST00000225180 1828 ntBASIC22.51■■□□□ 1.19
Trim28Q62318 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Trim28Q62318 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
Trim28Q62318 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC22.51■■□□□ 1.19
Trim28Q62318 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC22.51■■□□□ 1.19
Trim28Q62318 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim28Q62318 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim28Q62318 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Trim28Q62318 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trim28Q62318 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trim28Q62318 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trim28Q62318 Gm43182-201ENSMUST00000199476 2528 ntBASIC22.5■■□□□ 1.19
Trim28Q62318 Gm13186-201ENSMUST00000118031 316 ntBASIC22.5■■□□□ 1.19
Trim28Q62318 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Trim28Q62318 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Trim28Q62318 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms