Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col11a1Q61245 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col11a1Q61245 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Col11a1Q61245 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col11a1Q61245 Gm11779-201ENSMUST00000118541 368 ntBASIC19.44■□□□□ 0.7
Col11a1Q61245 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col11a1Q61245 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Col11a1Q61245 Ythdf2-201ENSMUST00000085181 955 ntTSL 2 BASIC19.44■□□□□ 0.7
Col11a1Q61245 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col11a1Q61245 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col11a1Q61245 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Col11a1Q61245 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col11a1Q61245 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.43■□□□□ 0.7
Col11a1Q61245 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC19.43■□□□□ 0.7
Col11a1Q61245 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col11a1Q61245 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col11a1Q61245 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col11a1Q61245 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col11a1Q61245 Ccl27a-217ENSMUST00000155240 343 ntTSL 2 BASIC19.43■□□□□ 0.7
Col11a1Q61245 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Col11a1Q61245 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC19.43■□□□□ 0.7
Col11a1Q61245 Gm44450-201ENSMUST00000199528 114 ntBASIC19.43■□□□□ 0.7
Col11a1Q61245 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col11a1Q61245 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col11a1Q61245 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col11a1Q61245 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col11a1Q61245 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Col11a1Q61245 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col11a1Q61245 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col11a1Q61245 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Col11a1Q61245 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col11a1Q61245 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col11a1Q61245 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col11a1Q61245 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.42■□□□□ 0.7
Col11a1Q61245 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col11a1Q61245 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col11a1Q61245 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC19.41■□□□□ 0.7
Col11a1Q61245 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC19.41■□□□□ 0.7
Col11a1Q61245 Gm12350-201ENSMUST00000121208 462 ntBASIC19.41■□□□□ 0.7
Col11a1Q61245 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col11a1Q61245 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col11a1Q61245 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col11a1Q61245 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col11a1Q61245 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col11a1Q61245 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col11a1Q61245 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC19.41■□□□□ 0.7
Col11a1Q61245 Gm10060-201ENSMUST00000212002 111 ntBASIC19.41■□□□□ 0.7
Col11a1Q61245 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col11a1Q61245 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col11a1Q61245 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC19.4■□□□□ 0.7
Col11a1Q61245 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.4■□□□□ 0.7
Col11a1Q61245 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col11a1Q61245 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Col11a1Q61245 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col11a1Q61245 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col11a1Q61245 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC19.4■□□□□ 0.7
Col11a1Q61245 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
Col11a1Q61245 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col11a1Q61245 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col11a1Q61245 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col11a1Q61245 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col11a1Q61245 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col11a1Q61245 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col11a1Q61245 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col11a1Q61245 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Col11a1Q61245 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Col11a1Q61245 Gm27702-201ENSMUST00000184512 56 ntBASIC19.39■□□□□ 0.7
Col11a1Q61245 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Col11a1Q61245 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Col11a1Q61245 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Col11a1Q61245 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Col11a1Q61245 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC19.39■□□□□ 0.69
Col11a1Q61245 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col11a1Q61245 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col11a1Q61245 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col11a1Q61245 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col11a1Q61245 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col11a1Q61245 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC19.39■□□□□ 0.69
Col11a1Q61245 Gm5364-201ENSMUST00000216789 889 ntBASIC19.39■□□□□ 0.69
Col11a1Q61245 Gm6296-201ENSMUST00000222599 943 ntBASIC19.39■□□□□ 0.69
Col11a1Q61245 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col11a1Q61245 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col11a1Q61245 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col11a1Q61245 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col11a1Q61245 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.39■□□□□ 0.69
Col11a1Q61245 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col11a1Q61245 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col11a1Q61245 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col11a1Q61245 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Col11a1Q61245 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC19.38■□□□□ 0.69
Col11a1Q61245 Gm6376-201ENSMUST00000209407 580 ntBASIC19.38■□□□□ 0.69
Col11a1Q61245 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC19.38■□□□□ 0.69
Col11a1Q61245 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col11a1Q61245 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col11a1Q61245 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Col11a1Q61245 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC19.38■□□□□ 0.69
Col11a1Q61245 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col11a1Q61245 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col11a1Q61245 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Col11a1Q61245 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 48.4 ms