Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Mir5133-201ENSMUST00000174955 77 ntBASIC19.06■□□□□ 0.64
CtcfQ61164 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.06■□□□□ 0.64
CtcfQ61164 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.06■□□□□ 0.64
CtcfQ61164 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CtcfQ61164 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CtcfQ61164 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CtcfQ61164 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CtcfQ61164 Gm45774-201ENSMUST00000211992 2665 ntBASIC19.05■□□□□ 0.64
CtcfQ61164 Gm7290-201ENSMUST00000104990 617 ntBASIC19.05■□□□□ 0.64
CtcfQ61164 Gm12918-201ENSMUST00000120234 636 ntBASIC19.05■□□□□ 0.64
CtcfQ61164 Gm15710-201ENSMUST00000121821 636 ntBASIC19.05■□□□□ 0.64
CtcfQ61164 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.05■□□□□ 0.64
CtcfQ61164 Gm5075-201ENSMUST00000196916 622 ntBASIC19.05■□□□□ 0.64
CtcfQ61164 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CtcfQ61164 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC19.05■□□□□ 0.64
CtcfQ61164 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.05■□□□□ 0.64
CtcfQ61164 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.05■□□□□ 0.64
CtcfQ61164 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CtcfQ61164 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CtcfQ61164 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CtcfQ61164 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CtcfQ61164 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CtcfQ61164 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC19.05■□□□□ 0.64
CtcfQ61164 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CtcfQ61164 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CtcfQ61164 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CtcfQ61164 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC19.04■□□□□ 0.64
CtcfQ61164 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CtcfQ61164 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CtcfQ61164 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CtcfQ61164 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC19.03■□□□□ 0.64
CtcfQ61164 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CtcfQ61164 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CtcfQ61164 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CtcfQ61164 Gm13401-201ENSMUST00000117074 291 ntBASIC19.03■□□□□ 0.64
CtcfQ61164 Gm11927-201ENSMUST00000118472 759 ntBASIC19.03■□□□□ 0.64
CtcfQ61164 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CtcfQ61164 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CtcfQ61164 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
CtcfQ61164 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC19.03■□□□□ 0.64
CtcfQ61164 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CtcfQ61164 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC19.03■□□□□ 0.64
CtcfQ61164 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CtcfQ61164 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CtcfQ61164 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CtcfQ61164 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CtcfQ61164 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CtcfQ61164 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CtcfQ61164 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CtcfQ61164 Rab3c-203ENSMUST00000224180 967 ntBASIC19.02■□□□□ 0.64
CtcfQ61164 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CtcfQ61164 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CtcfQ61164 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CtcfQ61164 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CtcfQ61164 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CtcfQ61164 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CtcfQ61164 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
CtcfQ61164 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.01■□□□□ 0.63
CtcfQ61164 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC19.01■□□□□ 0.63
CtcfQ61164 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Gm5408-201ENSMUST00000197998 747 ntBASIC19.01■□□□□ 0.63
CtcfQ61164 Gm29791-202ENSMUST00000207888 369 ntBASIC19.01■□□□□ 0.63
CtcfQ61164 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.01■□□□□ 0.63
CtcfQ61164 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CtcfQ61164 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CtcfQ61164 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms