Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc88aQ5SNZ0 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc88aQ5SNZ0 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Ccdc88aQ5SNZ0 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc88aQ5SNZ0 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc88aQ5SNZ0 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc88aQ5SNZ0 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Ccdc88aQ5SNZ0 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC19.9■□□□□ 0.78
Ccdc88aQ5SNZ0 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
Ccdc88aQ5SNZ0 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Ccdc88aQ5SNZ0 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC19.89■□□□□ 0.78
Ccdc88aQ5SNZ0 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Ccdc88aQ5SNZ0 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
Ccdc88aQ5SNZ0 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm24589-201ENSMUST00000116692 94 ntBASIC19.89■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm13474-201ENSMUST00000122466 815 ntBASIC19.89■□□□□ 0.77
Ccdc88aQ5SNZ0 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Ccdc88aQ5SNZ0 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm43514-201ENSMUST00000198852 424 ntBASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Il3ra-202ENSMUST00000223589 738 ntBASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Ccdc88aQ5SNZ0 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm43272-201ENSMUST00000200599 1584 ntBASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm27389-201ENSMUST00000183622 195 ntBASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm18115-201ENSMUST00000221209 621 ntBASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Ccdc88aQ5SNZ0 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm11950-201ENSMUST00000121615 838 ntBASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.86■□□□□ 0.77
Ccdc88aQ5SNZ0 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Gm44832-201ENSMUST00000208849 2303 ntBASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Spr-ps1-201ENSMUST00000089584 605 ntBASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Ccdc88aQ5SNZ0 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Fcho2-208ENSMUST00000224992 2964 ntBASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Ccdc88aQ5SNZ0 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 17.6 ms