Protein–RNA interactions for Protein: Q5R1C3

Trav3-3, T cell receptor alpha variable 3-3 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav3-3Q5R1C3 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC13.04□□□□□ -0.32
Trav3-3Q5R1C3 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Ccdc13-202ENSMUST00000135986 2640 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Appbp2-201ENSMUST00000018625 6463 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Trav3-3Q5R1C3 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC13.02□□□□□ -0.32
Trav3-3Q5R1C3 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-3Q5R1C3 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-3Q5R1C3 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-3Q5R1C3 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-3Q5R1C3 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-3Q5R1C3 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-3Q5R1C3 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-3Q5R1C3 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Trav3-3Q5R1C3 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Trav3-3Q5R1C3 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Gm9847-201ENSMUST00000052528 599 ntBASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Ogfrl1-201ENSMUST00000027343 4844 ntAPPRIS P1 TSL 3 BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Trav3-3Q5R1C3 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Haspin-201ENSMUST00000052140 2810 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Trav3-3Q5R1C3 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Spcs1-204ENSMUST00000226782 949 ntBASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC13□□□□□ -0.33
Trav3-3Q5R1C3 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms