Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col8a1Q00780 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC14.74□□□□□ -0.05
Col8a1Q00780 Gm3272-201ENSMUST00000181181 1229 ntBASIC14.74□□□□□ -0.05
Col8a1Q00780 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC14.74□□□□□ -0.05
Col8a1Q00780 Birc2-201ENSMUST00000054878 378 ntBASIC14.74□□□□□ -0.05
Col8a1Q00780 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
Col8a1Q00780 Gm10566-201ENSMUST00000086739 996 ntBASIC14.74□□□□□ -0.05
Col8a1Q00780 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col8a1Q00780 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col8a1Q00780 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col8a1Q00780 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Col8a1Q00780 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
Col8a1Q00780 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
Col8a1Q00780 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Col8a1Q00780 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Col8a1Q00780 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col8a1Q00780 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col8a1Q00780 Olfr129-201ENSMUST00000122318 993 ntBASIC14.72□□□□□ -0.05
Col8a1Q00780 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC14.72□□□□□ -0.05
Col8a1Q00780 Mir8098-201ENSMUST00000184011 137 ntBASIC14.72□□□□□ -0.05
Col8a1Q00780 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC14.72□□□□□ -0.05
Col8a1Q00780 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC14.72□□□□□ -0.05
Col8a1Q00780 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col8a1Q00780 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Col8a1Q00780 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Col8a1Q00780 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
Col8a1Q00780 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col8a1Q00780 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col8a1Q00780 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col8a1Q00780 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Col8a1Q00780 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC14.72□□□□□ -0.05
Col8a1Q00780 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Col8a1Q00780 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Mir770-201ENSMUST00000103252 94 ntBASIC14.71□□□□□ -0.05
Col8a1Q00780 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
Col8a1Q00780 Gm11452-201ENSMUST00000122376 690 ntBASIC14.71□□□□□ -0.05
Col8a1Q00780 Gm24841-201ENSMUST00000158676 357 ntBASIC14.71□□□□□ -0.05
Col8a1Q00780 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC14.71□□□□□ -0.05
Col8a1Q00780 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Col8a1Q00780 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Col8a1Q00780 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col8a1Q00780 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Col8a1Q00780 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Col8a1Q00780 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC14.7□□□□□ -0.06
Col8a1Q00780 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Gm26039-201ENSMUST00000158152 144 ntBASIC14.7□□□□□ -0.06
Col8a1Q00780 Gm27525-201ENSMUST00000184465 107 ntBASIC14.7□□□□□ -0.06
Col8a1Q00780 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC14.7□□□□□ -0.06
Col8a1Q00780 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Col8a1Q00780 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
Col8a1Q00780 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
Col8a1Q00780 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Col8a1Q00780 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col8a1Q00780 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Col8a1Q00780 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
Col8a1Q00780 Gm37820-201ENSMUST00000194021 2147 ntBASIC14.69□□□□□ -0.06
Col8a1Q00780 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Col8a1Q00780 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col8a1Q00780 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
Col8a1Q00780 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 77.2 ms