Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
Nkx3-1P97436 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Nkx3-1P97436 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Mir1668-201ENSMUST00000184114 107 ntBASIC14.96□□□□□ -0.01
Nkx3-1P97436 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC14.96□□□□□ -0.01
Nkx3-1P97436 AC120002.2-201ENSMUST00000220205 773 ntBASIC14.96□□□□□ -0.01
Nkx3-1P97436 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC14.96□□□□□ -0.01
Nkx3-1P97436 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Nkx3-1P97436 Gm35558-201ENSMUST00000222675 2219 ntBASIC14.96□□□□□ -0.02
Nkx3-1P97436 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Nkx3-1P97436 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
Nkx3-1P97436 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC14.95□□□□□ -0.02
Nkx3-1P97436 Gm5587-201ENSMUST00000206270 674 ntBASIC14.95□□□□□ -0.02
Nkx3-1P97436 Gm7213-201ENSMUST00000215977 950 ntBASIC14.95□□□□□ -0.02
Nkx3-1P97436 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Nkx3-1P97436 AC154471.1-201ENSMUST00000224418 436 ntBASIC14.95□□□□□ -0.02
Nkx3-1P97436 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Nkx3-1P97436 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Nkx3-1P97436 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
Nkx3-1P97436 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Nkx3-1P97436 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Nkx3-1P97436 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Gm37374-201ENSMUST00000194954 1829 ntBASIC14.94□□□□□ -0.02
Nkx3-1P97436 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Nkx3-1P97436 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Gm9013-201ENSMUST00000132939 882 ntBASIC14.93□□□□□ -0.02
Nkx3-1P97436 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Nkx3-1P97436 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC14.92□□□□□ -0.02
Nkx3-1P97436 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Gm27704-201ENSMUST00000185094 107 ntBASIC14.92□□□□□ -0.02
Nkx3-1P97436 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Nkx3-1P97436 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
Nkx3-1P97436 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms