Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Lig3P97386 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Lig3P97386 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Lig3P97386 Gm10013-201ENSMUST00000106074 672 ntBASIC18.83■□□□□ 0.6
Lig3P97386 AA414768-201ENSMUST00000121924 1257 ntBASIC18.83■□□□□ 0.6
Lig3P97386 Gm6345-202ENSMUST00000180900 204 ntBASIC18.83■□□□□ 0.6
Lig3P97386 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.83■□□□□ 0.6
Lig3P97386 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lig3P97386 Mtag2-201ENSMUST00000058665 714 ntBASIC18.83■□□□□ 0.6
Lig3P97386 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lig3P97386 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Lig3P97386 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
Lig3P97386 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lig3P97386 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lig3P97386 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Lig3P97386 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Gm10138-203ENSMUST00000206952 366 ntBASIC18.82■□□□□ 0.6
Lig3P97386 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Gm18025-201ENSMUST00000221733 862 ntBASIC18.82■□□□□ 0.6
Lig3P97386 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.82■□□□□ 0.6
Lig3P97386 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
Lig3P97386 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Lig3P97386 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lig3P97386 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lig3P97386 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
Lig3P97386 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lig3P97386 Gm6598-201ENSMUST00000202719 2615 ntBASIC18.81■□□□□ 0.6
Lig3P97386 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lig3P97386 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lig3P97386 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Lig3P97386 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.81■□□□□ 0.6
Lig3P97386 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Lig3P97386 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lig3P97386 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lig3P97386 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Lig3P97386 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Lig3P97386 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lig3P97386 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Lig3P97386 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lig3P97386 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lig3P97386 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lig3P97386 Gm9103-201ENSMUST00000119371 405 ntBASIC18.8■□□□□ 0.6
Lig3P97386 Gm14464-201ENSMUST00000119658 1254 ntBASIC18.8■□□□□ 0.6
Lig3P97386 Gm18959-201ENSMUST00000208954 655 ntBASIC18.8■□□□□ 0.6
Lig3P97386 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lig3P97386 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lig3P97386 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lig3P97386 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lig3P97386 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lig3P97386 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC18.8■□□□□ 0.6
Lig3P97386 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC18.8■□□□□ 0.6
Lig3P97386 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lig3P97386 Gm7712-202ENSMUST00000222331 1510 ntBASIC18.79■□□□□ 0.6
Lig3P97386 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lig3P97386 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.79■□□□□ 0.6
Lig3P97386 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lig3P97386 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lig3P97386 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lig3P97386 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lig3P97386 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lig3P97386 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lig3P97386 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lig3P97386 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC18.79■□□□□ 0.6
Lig3P97386 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC18.79■□□□□ 0.6
Lig3P97386 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
Lig3P97386 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC18.79■□□□□ 0.6
Lig3P97386 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Lig3P97386 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC18.79■□□□□ 0.6
Lig3P97386 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lig3P97386 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Lig3P97386 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Lig3P97386 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Lig3P97386 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Lig3P97386 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Lig3P97386 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lig3P97386 Gm42545-201ENSMUST00000202755 922 ntBASIC18.78■□□□□ 0.6
Lig3P97386 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC18.78■□□□□ 0.6
Lig3P97386 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC18.78■□□□□ 0.6
Lig3P97386 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lig3P97386 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Lig3P97386 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lig3P97386 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Lig3P97386 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lig3P97386 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lig3P97386 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Lig3P97386 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lig3P97386 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Lig3P97386 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC18.77■□□□□ 0.6
Lig3P97386 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lig3P97386 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms