Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sox1P53783 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Sox1P53783 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.7■□□□□ 0.42
Sox1P53783 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sox1P53783 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sox1P53783 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Sox1P53783 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC17.7■□□□□ 0.42
Sox1P53783 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sox1P53783 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Sox1P53783 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Sox1P53783 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Sox1P53783 AC154527.4-201ENSMUST00000224364 1667 ntBASIC17.69■□□□□ 0.42
Sox1P53783 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Tpt1-201ENSMUST00000110894 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC17.69■□□□□ 0.42
Sox1P53783 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17.69■□□□□ 0.42
Sox1P53783 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Sox1P53783 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Sox1P53783 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Sox1P53783 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.68■□□□□ 0.42
Sox1P53783 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC17.68■□□□□ 0.42
Sox1P53783 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sox1P53783 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC17.68■□□□□ 0.42
Sox1P53783 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sox1P53783 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sox1P53783 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sox1P53783 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Sox1P53783 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Sox1P53783 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sox1P53783 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.67■□□□□ 0.42
Sox1P53783 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sox1P53783 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sox1P53783 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sox1P53783 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sox1P53783 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC17.67■□□□□ 0.42
Sox1P53783 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Sox1P53783 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC17.67■□□□□ 0.42
Sox1P53783 Gm26308-201ENSMUST00000157768 69 ntBASIC17.67■□□□□ 0.42
Sox1P53783 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sox1P53783 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sox1P53783 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sox1P53783 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Sox1P53783 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Sox1P53783 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Sox1P53783 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC17.66■□□□□ 0.42
Sox1P53783 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Mark2-207ENSMUST00000165286 2975 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Sox1P53783 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sox1P53783 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC17.66■□□□□ 0.42
Sox1P53783 Gm18856-201ENSMUST00000178096 1374 ntBASIC17.66■□□□□ 0.42
Sox1P53783 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Sox1P53783 Dapk1-207ENSMUST00000226059 5009 ntBASIC17.65■□□□□ 0.42
Sox1P53783 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 AC157650.3-201ENSMUST00000225058 1476 ntBASIC17.65■□□□□ 0.42
Sox1P53783 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Sox1P53783 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sox1P53783 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Sox1P53783 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Sox1P53783 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sox1P53783 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
Sox1P53783 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sox1P53783 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
Sox1P53783 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Sox1P53783 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sox1P53783 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Sox1P53783 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Sox1P53783 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms