Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ercc3P49135 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ercc3P49135 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ercc3P49135 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC20.51■□□□□ 0.87
Ercc3P49135 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ercc3P49135 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ercc3P49135 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ercc3P49135 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ercc3P49135 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ercc3P49135 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Ercc3P49135 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ercc3P49135 Mff-208ENSMUST00000160786 1645 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ercc3P49135 Gm43702-201ENSMUST00000198772 2546 ntBASIC20.5■□□□□ 0.87
Ercc3P49135 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ercc3P49135 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC20.5■□□□□ 0.87
Ercc3P49135 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC20.5■□□□□ 0.87
Ercc3P49135 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ercc3P49135 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ercc3P49135 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ercc3P49135 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ercc3P49135 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ercc3P49135 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ercc3P49135 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ercc3P49135 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ercc3P49135 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Ercc3P49135 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ercc3P49135 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ercc3P49135 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ercc3P49135 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Ercc3P49135 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ercc3P49135 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ercc3P49135 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ercc3P49135 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC20.48■□□□□ 0.87
Ercc3P49135 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ercc3P49135 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ercc3P49135 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ercc3P49135 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ercc3P49135 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Ercc3P49135 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
Ercc3P49135 Mir7071-201ENSMUST00000184847 69 ntBASIC20.48■□□□□ 0.87
Ercc3P49135 Krtap5-1-202ENSMUST00000188274 742 ntBASIC20.48■□□□□ 0.87
Ercc3P49135 Gm38027-201ENSMUST00000192315 235 ntBASIC20.48■□□□□ 0.87
Ercc3P49135 AC135963.1-201ENSMUST00000211640 717 ntBASIC20.48■□□□□ 0.87
Ercc3P49135 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC20.48■□□□□ 0.87
Ercc3P49135 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ercc3P49135 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ercc3P49135 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ercc3P49135 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ercc3P49135 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC20.47■□□□□ 0.87
Ercc3P49135 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ercc3P49135 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ercc3P49135 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ercc3P49135 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC20.47■□□□□ 0.87
Ercc3P49135 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ercc3P49135 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ercc3P49135 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Ercc3P49135 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ercc3P49135 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Ercc3P49135 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ercc3P49135 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ercc3P49135 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
Ercc3P49135 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC20.47■□□□□ 0.87
Ercc3P49135 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ercc3P49135 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ercc3P49135 Gm43272-201ENSMUST00000200599 1584 ntBASIC20.46■□□□□ 0.87
Ercc3P49135 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ercc3P49135 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Ercc3P49135 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ercc3P49135 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Ercc3P49135 AC122335.2-201ENSMUST00000213901 6181 ntBASIC20.46■□□□□ 0.87
Ercc3P49135 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC20.46■□□□□ 0.87
Ercc3P49135 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.46■□□□□ 0.87
Ercc3P49135 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ercc3P49135 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Ercc3P49135 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Ercc3P49135 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ercc3P49135 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Ercc3P49135 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC20.45■□□□□ 0.86
Ercc3P49135 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC20.45■□□□□ 0.86
Ercc3P49135 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Gm37519-201ENSMUST00000191687 2210 ntBASIC20.45■□□□□ 0.86
Ercc3P49135 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Ercc3P49135 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Gm30025-201ENSMUST00000218555 728 ntBASIC20.45■□□□□ 0.86
Ercc3P49135 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Ercc3P49135 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Ercc3P49135 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Ercc3P49135 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 36.8 ms