Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 Gm6576-201ENSMUST00000169678 883 ntBASIC18.74■□□□□ 0.59
RaraP11416 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18.74■□□□□ 0.59
RaraP11416 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.74■□□□□ 0.59
RaraP11416 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
RaraP11416 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.73■□□□□ 0.59
RaraP11416 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
RaraP11416 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
RaraP11416 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
RaraP11416 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
RaraP11416 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC18.72■□□□□ 0.59
RaraP11416 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.72■□□□□ 0.59
RaraP11416 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
RaraP11416 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.72■□□□□ 0.59
RaraP11416 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
RaraP11416 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RaraP11416 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
RaraP11416 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RaraP11416 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RaraP11416 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
RaraP11416 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
RaraP11416 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
RaraP11416 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
RaraP11416 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC18.71■□□□□ 0.59
RaraP11416 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
RaraP11416 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
RaraP11416 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
RaraP11416 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RaraP11416 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
RaraP11416 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RaraP11416 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RaraP11416 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RaraP11416 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RaraP11416 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RaraP11416 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC18.7■□□□□ 0.58
RaraP11416 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
RaraP11416 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.7■□□□□ 0.58
RaraP11416 AC164629.5-201ENSMUST00000220387 632 ntBASIC18.7■□□□□ 0.58
RaraP11416 Gm10602-201ENSMUST00000098239 609 ntBASIC18.7■□□□□ 0.58
RaraP11416 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RaraP11416 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RaraP11416 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.7■□□□□ 0.58
RaraP11416 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.7■□□□□ 0.58
RaraP11416 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RaraP11416 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
RaraP11416 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
RaraP11416 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RaraP11416 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RaraP11416 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RaraP11416 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RaraP11416 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RaraP11416 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC18.69■□□□□ 0.58
RaraP11416 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RaraP11416 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC18.69■□□□□ 0.58
RaraP11416 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RaraP11416 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RaraP11416 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC18.69■□□□□ 0.58
RaraP11416 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RaraP11416 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.69■□□□□ 0.58
RaraP11416 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.69■□□□□ 0.58
RaraP11416 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RaraP11416 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
RaraP11416 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 47.5 ms