Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Col1a1P11087 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col1a1P11087 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col1a1P11087 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Col1a1P11087 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col1a1P11087 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC20.27■□□□□ 0.84
Col1a1P11087 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC20.27■□□□□ 0.84
Col1a1P11087 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col1a1P11087 Gm11336-201ENSMUST00000118168 334 ntBASIC20.27■□□□□ 0.84
Col1a1P11087 Gm10052-201ENSMUST00000168019 960 ntBASIC20.27■□□□□ 0.84
Col1a1P11087 Gm18195-201ENSMUST00000207604 706 ntBASIC20.27■□□□□ 0.84
Col1a1P11087 Gm7729-201ENSMUST00000050143 801 ntBASIC20.27■□□□□ 0.84
Col1a1P11087 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC20.27■□□□□ 0.84
Col1a1P11087 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col1a1P11087 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col1a1P11087 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC20.27■□□□□ 0.84
Col1a1P11087 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col1a1P11087 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col1a1P11087 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Col1a1P11087 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Col1a1P11087 Idnk-204ENSMUST00000226010 1898 ntBASIC20.27■□□□□ 0.83
Col1a1P11087 Zkscan4-202ENSMUST00000225845 1506 ntBASIC20.26■□□□□ 0.83
Col1a1P11087 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col1a1P11087 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col1a1P11087 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC20.26■□□□□ 0.83
Col1a1P11087 Gm5712-201ENSMUST00000199748 1043 ntBASIC20.26■□□□□ 0.83
Col1a1P11087 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col1a1P11087 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col1a1P11087 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col1a1P11087 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col1a1P11087 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC20.26■□□□□ 0.83
Col1a1P11087 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col1a1P11087 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col1a1P11087 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Col1a1P11087 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col1a1P11087 Inip-202ENSMUST00000107526 1438 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Col1a1P11087 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC20.25■□□□□ 0.83
Col1a1P11087 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC20.25■□□□□ 0.83
Col1a1P11087 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Col1a1P11087 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Col1a1P11087 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC20.25■□□□□ 0.83
Col1a1P11087 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Col1a1P11087 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
Col1a1P11087 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col1a1P11087 Slc25a43-201ENSMUST00000047655 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col1a1P11087 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Col1a1P11087 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col1a1P11087 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col1a1P11087 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col1a1P11087 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col1a1P11087 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col1a1P11087 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Col1a1P11087 Gm27000-201ENSMUST00000182943 842 ntBASIC20.24■□□□□ 0.83
Col1a1P11087 Gm33054-201ENSMUST00000216588 313 ntTSL 5 BASIC20.24■□□□□ 0.83
Col1a1P11087 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Col1a1P11087 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col1a1P11087 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col1a1P11087 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC20.23■□□□□ 0.83
Col1a1P11087 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Col1a1P11087 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC20.23■□□□□ 0.83
Col1a1P11087 Gm13186-201ENSMUST00000118031 316 ntBASIC20.23■□□□□ 0.83
Col1a1P11087 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC20.23■□□□□ 0.83
Col1a1P11087 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC20.23■□□□□ 0.83
Col1a1P11087 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC20.22■□□□□ 0.83
Col1a1P11087 Gm9449-201ENSMUST00000207265 1011 ntBASIC20.22■□□□□ 0.83
Col1a1P11087 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Iqck-206ENSMUST00000208658 2891 ntBASIC20.22■□□□□ 0.83
Col1a1P11087 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Col1a1P11087 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 39.7 ms