Protein–RNA interactions for Protein: P10855

Ccl3, C-C motif chemokine 3, mousemouse

Predictions only

Length 92 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccl3P10855 Cxcl14-202ENSMUST00000224801 1467 ntBASIC15.31■□□□□ 0.04
Ccl3P10855 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccl3P10855 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccl3P10855 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccl3P10855 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccl3P10855 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Ccl3P10855 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Ccl3P10855 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Ccl3P10855 Gm24589-201ENSMUST00000116692 94 ntBASIC15.3■□□□□ 0.04
Ccl3P10855 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC15.3■□□□□ 0.04
Ccl3P10855 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC15.3■□□□□ 0.04
Ccl3P10855 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC15.3■□□□□ 0.04
Ccl3P10855 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC15.3■□□□□ 0.04
Ccl3P10855 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 Spr-ps1-201ENSMUST00000089584 605 ntBASIC15.3■□□□□ 0.04
Ccl3P10855 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Ccl3P10855 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Ccl3P10855 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC15.29■□□□□ 0.04
Ccl3P10855 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC15.29■□□□□ 0.04
Ccl3P10855 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC15.29■□□□□ 0.04
Ccl3P10855 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC15.29■□□□□ 0.04
Ccl3P10855 Gm18115-201ENSMUST00000221209 621 ntBASIC15.29■□□□□ 0.04
Ccl3P10855 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Aadat-201ENSMUST00000079472 1972 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Ccl3P10855 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccl3P10855 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccl3P10855 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Ccl3P10855 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccl3P10855 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Ccl3P10855 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccl3P10855 Olfr129-201ENSMUST00000122318 993 ntBASIC15.28■□□□□ 0.04
Ccl3P10855 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccl3P10855 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC15.28■□□□□ 0.04
Ccl3P10855 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Ccl3P10855 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccl3P10855 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Ccl3P10855 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccl3P10855 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccl3P10855 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Ccl3P10855 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccl3P10855 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccl3P10855 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Ccl3P10855 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
Ccl3P10855 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccl3P10855 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccl3P10855 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Ccl3P10855 Ighv6-1-201ENSMUST00000193612 343 ntBASIC15.27■□□□□ 0.04
Ccl3P10855 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccl3P10855 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Ccl3P10855 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccl3P10855 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccl3P10855 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccl3P10855 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccl3P10855 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccl3P10855 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccl3P10855 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Ccl3P10855 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Ccl3P10855 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
Ccl3P10855 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Ccl3P10855 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccl3P10855 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccl3P10855 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccl3P10855 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccl3P10855 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ccl3P10855 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccl3P10855 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ccl3P10855 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Ccl3P10855 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Ccl3P10855 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccl3P10855 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
Ccl3P10855 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Ccl3P10855 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC15.26■□□□□ 0.03
Ccl3P10855 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC15.26■□□□□ 0.03
Ccl3P10855 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Ccl3P10855 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC15.26■□□□□ 0.03
Ccl3P10855 Gm44771-201ENSMUST00000206975 626 ntBASIC15.26■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms