Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Chmp6P0C0A3 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Chmp6P0C0A3 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Chmp6P0C0A3 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Chmp6P0C0A3 AC124581.1-201ENSMUST00000225416 1399 ntBASIC18.83■□□□□ 0.61
Chmp6P0C0A3 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Chmp6P0C0A3 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Chmp6P0C0A3 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Chmp6P0C0A3 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Chmp6P0C0A3 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Gm29791-202ENSMUST00000207888 369 ntBASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Chmp6P0C0A3 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Gm6576-201ENSMUST00000169678 883 ntBASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Chmp6P0C0A3 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Gm10418-201ENSMUST00000100943 576 ntBASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Chmp6P0C0A3 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Chmp6P0C0A3 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 31.2 ms