Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
Col4a1P02463 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col4a1P02463 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Col4a1P02463 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Col4a1P02463 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Col4a1P02463 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC21.33■■□□□ 1
Col4a1P02463 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1
Col4a1P02463 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Col4a1P02463 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Col4a1P02463 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
Col4a1P02463 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Col4a1P02463 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC21.33■■□□□ 1
Col4a1P02463 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col4a1P02463 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col4a1P02463 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col4a1P02463 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Col4a1P02463 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Col4a1P02463 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC21.32■■□□□ 1
Col4a1P02463 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col4a1P02463 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col4a1P02463 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC21.32■■□□□ 1
Col4a1P02463 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
Col4a1P02463 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Col4a1P02463 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC21.31■■□□□ 1
Col4a1P02463 Gm13186-201ENSMUST00000118031 316 ntBASIC21.31■■□□□ 1
Col4a1P02463 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col4a1P02463 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Col4a1P02463 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col4a1P02463 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col4a1P02463 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Col4a1P02463 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col4a1P02463 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Col4a1P02463 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col4a1P02463 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Col4a1P02463 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col4a1P02463 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Col4a1P02463 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
Col4a1P02463 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC21.31■■□□□ 1
Col4a1P02463 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC21.31■■□□□ 1
Col4a1P02463 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC21.31■■□□□ 1
Col4a1P02463 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC21.31■■□□□ 1
Col4a1P02463 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC21.31■■□□□ 1
Col4a1P02463 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Col4a1P02463 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Col4a1P02463 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Col4a1P02463 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col4a1P02463 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col4a1P02463 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col4a1P02463 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC21.3■■□□□ 1
Col4a1P02463 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col4a1P02463 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC21.3■■□□□ 1
Col4a1P02463 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC21.3■■□□□ 1
Col4a1P02463 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col4a1P02463 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col4a1P02463 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col4a1P02463 AC124569.2-201ENSMUST00000225998 818 ntBASIC21.3■■□□□ 1
Col4a1P02463 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col4a1P02463 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC21.3■■□□□ 1
Col4a1P02463 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col4a1P02463 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Col4a1P02463 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
Col4a1P02463 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Col4a1P02463 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col4a1P02463 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col4a1P02463 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Col4a1P02463 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
Col4a1P02463 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col4a1P02463 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC21.28■■□□□ 1
Col4a1P02463 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col4a1P02463 AC125350.1-201ENSMUST00000225115 903 ntBASIC21.28■■□□□ 1
Col4a1P02463 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC21.28■■□□□ 1
Col4a1P02463 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col4a1P02463 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col4a1P02463 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col4a1P02463 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col4a1P02463 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col4a1P02463 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Col4a1P02463 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC21.28■■□□□ 1
Col4a1P02463 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col4a1P02463 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC21.28■■□□□ 1
Col4a1P02463 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC21.28■■□□□ 1
Col4a1P02463 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col4a1P02463 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Col4a1P02463 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col4a1P02463 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC21.27■■□□□ 1
Col4a1P02463 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col4a1P02463 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col4a1P02463 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col4a1P02463 Gm11336-201ENSMUST00000118168 334 ntBASIC21.27■■□□□ 1
Col4a1P02463 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC21.27■■□□□ 1
Col4a1P02463 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col4a1P02463 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Col4a1P02463 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
Col4a1P02463 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Col4a1P02463 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Col4a1P02463 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col4a1P02463 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col4a1P02463 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col4a1P02463 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col4a1P02463 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms