Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Trav13d-3J3QMG8 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Gm43338-201ENSMUST00000198617 2223 ntBASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Gm43294-201ENSMUST00000202850 2490 ntBASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Gm24841-201ENSMUST00000158676 357 ntBASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Trav13d-3J3QMG8 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Trav13d-3J3QMG8 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC15.21■□□□□ 0.02
Trav13d-3J3QMG8 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 AC153881.1-201ENSMUST00000214448 284 ntBASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 AC175538.1-201ENSMUST00000225343 1269 ntBASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Spcs1-207ENSMUST00000228767 1008 ntBASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Gm15635-204ENSMUST00000208024 2539 ntBASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Trav13d-3J3QMG8 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Mir1199-201ENSMUST00000117015 119 ntBASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Gm22240-201ENSMUST00000175225 82 ntBASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 AC154649.1-201ENSMUST00000227392 384 ntBASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Gm19439-201ENSMUST00000198195 2273 ntBASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Trav13d-3J3QMG8 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Gm7712-202ENSMUST00000222331 1510 ntBASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Trav13d-3J3QMG8 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms