Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Gm13234-201ENSMUST00000120010 747 ntBASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
Trav11A0A0B4J1J9 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Shank3-201ENSMUST00000039074 7131 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Gm44544-201ENSMUST00000207052 1844 ntBASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 St8sia6-201ENSMUST00000003509 7618 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Trav11A0A0B4J1J9 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Trav11A0A0B4J1J9 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 CT010478.1-201ENSMUST00000220747 2787 ntBASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Gm10655-201ENSMUST00000098658 1397 ntBASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Trav11A0A0B4J1J9 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms