Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm45368-201ENSMUST00000209323 703 ntTSL 5 BASIC4.09□□□□□ -1.75
Col28a1Q2UY11 Gm7624-201ENSMUST00000209702 435 ntBASIC4.09□□□□□ -1.75
Col28a1Q2UY11 Gm6303-201ENSMUST00000210123 471 ntBASIC4.09□□□□□ -1.75
Col28a1Q2UY11 Gm18113-201ENSMUST00000220630 303 ntBASIC4.09□□□□□ -1.75
Col28a1Q2UY11 Vmn2r-ps102-203ENSMUST00000222739 604 ntTSL 5 BASIC4.09□□□□□ -1.75
Col28a1Q2UY11 AC140451.2-202ENSMUST00000226156 574 ntBASIC4.09□□□□□ -1.75
Col28a1Q2UY11 AC156790.5-201ENSMUST00000227075 231 ntBASIC4.09□□□□□ -1.75
Col28a1Q2UY11 Gm12582-201ENSMUST00000030555 697 ntBASIC4.09□□□□□ -1.75
Col28a1Q2UY11 Art2b-201ENSMUST00000063920 870 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.75
Col28a1Q2UY11 Gm24268-201ENSMUST00000082990 110 ntBASIC4.09□□□□□ -1.75
Col28a1Q2UY11 Reg3d-201ENSMUST00000089667 782 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
Col28a1Q2UY11 Gprc6a-203ENSMUST00000219286 2574 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
Col28a1Q2UY11 Mageb5-201ENSMUST00000082048 1357 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
Col28a1Q2UY11 Gm38269-201ENSMUST00000194549 3298 ntBASIC4.09□□□□□ -1.76
Col28a1Q2UY11 Gm2888-201ENSMUST00000170521 1758 ntAPPRIS P5 TSL 5 BASIC4.09□□□□□ -1.76
Col28a1Q2UY11 Gm7876-202ENSMUST00000171305 1758 ntAPPRIS P5 TSL 5 BASIC4.09□□□□□ -1.76
Col28a1Q2UY11 Gm35755-201ENSMUST00000222392 2077 ntBASIC4.09□□□□□ -1.76
Col28a1Q2UY11 Gm7697-201ENSMUST00000201500 2507 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
Col28a1Q2UY11 F9-201ENSMUST00000033477 2734 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Erv3-201ENSMUST00000040941 3378 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Has2-201ENSMUST00000050544 4237 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm6592-201ENSMUST00000115563 507 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Mir669i-201ENSMUST00000117007 127 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm12230-201ENSMUST00000118301 454 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm13603-201ENSMUST00000119404 83 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm11625-201ENSMUST00000119535 296 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm14991-201ENSMUST00000119913 598 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm14574-201ENSMUST00000120644 279 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm12724-201ENSMUST00000140196 665 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm24910-201ENSMUST00000157289 272 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm22536-201ENSMUST00000158171 134 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm23852-201ENSMUST00000158376 77 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm1992-201ENSMUST00000161581 250 ntTSL 3 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm5798-201ENSMUST00000164613 1751 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm17657-201ENSMUST00000168877 510 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Esp34-201ENSMUST00000173055 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Vmn1r-ps14-201ENSMUST00000176859 913 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm24315-201ENSMUST00000177835 127 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm21737-201ENSMUST00000178112 664 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm20874-201ENSMUST00000178356 663 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm21744-201ENSMUST00000178403 662 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Esp34-202ENSMUST00000178654 1413 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 9330182O14Rik-201ENSMUST00000179120 423 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm20901-201ENSMUST00000180177 664 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm21960-201ENSMUST00000181924 452 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm28090-201ENSMUST00000189458 664 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm21647-201ENSMUST00000189755 664 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm37501-201ENSMUST00000192830 691 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Trbv24-201ENSMUST00000194614 347 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm31415-201ENSMUST00000194963 344 ntTSL 5 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm3933-201ENSMUST00000195391 439 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Csn2-208ENSMUST00000198057 827 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm43527-201ENSMUST00000198749 3178 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm43645-201ENSMUST00000200129 341 ntTSL 2 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Fbxw28-204ENSMUST00000200156 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm43925-201ENSMUST00000203498 206 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm38991-201ENSMUST00000205504 138 ntTSL 5 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm45434-201ENSMUST00000210550 293 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm32975-201ENSMUST00000211651 584 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 1700054O05Rik-201ENSMUST00000214107 555 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Olfr1324-203ENSMUST00000219631 1152 ntAPPRIS P2 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm10264-201ENSMUST00000220589 429 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 CT030135.1-201ENSMUST00000223760 570 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 AC239878.2-201ENSMUST00000224048 464 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Pmch-201ENSMUST00000048621 749 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Olfr1324-201ENSMUST00000050044 1152 ntAPPRIS ALT2 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Olfr395-201ENSMUST00000072991 939 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Olfr168-201ENSMUST00000078554 939 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm26449-201ENSMUST00000082452 104 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm24319-201ENSMUST00000083389 107 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Mir421-201ENSMUST00000083575 76 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Olfr382-201ENSMUST00000092921 939 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Rbbp6-203ENSMUST00000098062 6345 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Xrn1-202ENSMUST00000185633 10256 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 AC140397.1-201ENSMUST00000225563 4562 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Olfr905-202ENSMUST00000214377 4429 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm43658-201ENSMUST00000202348 4176 ntBASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Ptprz1-201ENSMUST00000090568 8068 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
Col28a1Q2UY11 Gm37899-201ENSMUST00000193116 8717 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 4921501E09Rik-201ENSMUST00000024121 3916 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Olfr872-201ENSMUST00000086474 1897 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Vmn2r30-202ENSMUST00000174368 3688 ntTSL 2 BASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm42483-201ENSMUST00000197556 1742 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm43990-201ENSMUST00000203790 1691 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Zfp131-201ENSMUST00000177916 3067 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Mrgprc2-ps-201ENSMUST00000188039 1516 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm336-201ENSMUST00000186376 1480 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm11251-201ENSMUST00000119593 2800 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm14401-203ENSMUST00000108970 948 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm12837-201ENSMUST00000120131 373 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm23789-201ENSMUST00000122536 301 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm4487-201ENSMUST00000150617 442 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm22945-201ENSMUST00000158557 157 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm17732-201ENSMUST00000163259 821 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm17054-201ENSMUST00000169811 259 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm2056-201ENSMUST00000178852 435 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm27883-201ENSMUST00000183941 102 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm27957-201ENSMUST00000184054 127 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm29031-201ENSMUST00000185316 614 ntBASIC4.07□□□□□ -1.76
Col28a1Q2UY11 Gm29000-201ENSMUST00000185444 614 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 76,532 protein–RNA pairs in 84.6 ms