Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm20257-202ENSMUST00000188643 130 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm9134-201ENSMUST00000193186 551 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Trbv11-201ENSMUST00000194354 260 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm37089-201ENSMUST00000195616 129 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm7626-201ENSMUST00000195801 353 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm42543-201ENSMUST00000198756 353 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Mgst1-208ENSMUST00000204628 471 ntTSL 3 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 AC153961.2-201ENSMUST00000218877 164 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm7240-202ENSMUST00000221961 353 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Gm2614-201ENSMUST00000223227 403 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 AC124182.1-201ENSMUST00000227091 321 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 AC133910.1-201ENSMUST00000228128 624 ntBASIC6.11□□□□□ -1.43
Rnf40Q3U319 Slc7a2-203ENSMUST00000117077 7626 ntAPPRIS ALT1 TSL 1 (best) BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Agbl2-208ENSMUST00000170320 4507 ntAPPRIS P2 TSL 1 (best) BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Rbpj-202ENSMUST00000087360 5252 ntTSL 5 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Vps13d-201ENSMUST00000020441 15665 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Cftr-204ENSMUST00000129452 2835 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Vmn1r32-201ENSMUST00000079584 2833 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Wdr17-202ENSMUST00000127511 4668 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Setd2-201ENSMUST00000153838 8350 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
Rnf40Q3U319 Lama2-207ENSMUST00000189575 4244 ntTSL 5 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Dsc1-201ENSMUST00000038710 3775 ntAPPRIS P2 TSL 1 (best) BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Mbnl1-214ENSMUST00000193517 5151 ntAPPRIS ALT1 TSL 5 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Zfp229-203ENSMUST00000182603 4315 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Olfr644-202ENSMUST00000213184 3572 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm43000-201ENSMUST00000198482 3343 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm44144-201ENSMUST00000203683 1960 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Vmn1r87-204ENSMUST00000228800 1993 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm15058-201ENSMUST00000117689 458 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm11920-201ENSMUST00000118491 563 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm6175-201ENSMUST00000121351 400 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm28020-201ENSMUST00000157739 67 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm22328-201ENSMUST00000158074 112 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Isx-202ENSMUST00000174427 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm24812-201ENSMUST00000175315 284 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm25640-201ENSMUST00000175378 125 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm21860-201ENSMUST00000177893 309 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm22852-201ENSMUST00000177899 101 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm23018-201ENSMUST00000177928 109 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm21748-201ENSMUST00000179623 309 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm24968-201ENSMUST00000179817 107 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Trav6d-5-201ENSMUST00000180687 338 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 2310020H05Rik-201ENSMUST00000189489 720 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Ighv3-2-201ENSMUST00000191842 349 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm37774-201ENSMUST00000194401 245 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm43357-201ENSMUST00000197132 342 ntTSL 3 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm29791-201ENSMUST00000207144 380 ntTSL 3 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm33586-201ENSMUST00000210768 892 ntTSL 3 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 AC153847.1-201ENSMUST00000214524 353 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 AC161383.1-201ENSMUST00000227356 527 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm9985-201ENSMUST00000044101 510 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Rps11-ps4-201ENSMUST00000062226 474 ntBASIC6.1□□□□□ -1.43
Rnf40Q3U319 Defa17-201ENSMUST00000079528 397 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Sirpb1c-203ENSMUST00000108350 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Vmn1r34-204ENSMUST00000226999 3048 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Med13-201ENSMUST00000043624 10546 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Zscan4c-201ENSMUST00000131379 2276 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Olfr1057-202ENSMUST00000217435 3249 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Vmn2r107-201ENSMUST00000042090 2586 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
Rnf40Q3U319 Gm8750-201ENSMUST00000173278 1537 ntBASIC6.09□□□□□ -1.43
Rnf40Q3U319 AC159193.1-201ENSMUST00000222872 2517 ntBASIC6.09□□□□□ -1.43
Rnf40Q3U319 Vmn1r51-209ENSMUST00000227911 4021 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Olfr351-203ENSMUST00000215137 2856 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Nsun6-201ENSMUST00000028034 2897 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Pirb-201ENSMUST00000078451 3824 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Epha3-201ENSMUST00000064405 5659 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Amy2a3-201ENSMUST00000179314 3717 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Amy2a4-201ENSMUST00000179568 3717 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Amy2a2-201ENSMUST00000098667 3717 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm9923-201ENSMUST00000217785 1836 ntBASIC6.09□□□□□ -1.43
Rnf40Q3U319 Zfp26-203ENSMUST00000159569 11276 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Trav16-201ENSMUST00000103667 420 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm15846-201ENSMUST00000116022 320 ntBASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm15349-201ENSMUST00000121154 204 ntBASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm16070-202ENSMUST00000149914 2146 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm25883-201ENSMUST00000157781 271 ntBASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm15810-201ENSMUST00000160241 681 ntTSL 3 BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm17052-201ENSMUST00000165496 289 ntBASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm20475-201ENSMUST00000174884 263 ntTSL 3 BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm28863-201ENSMUST00000186888 431 ntTSL 3 BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm28817-201ENSMUST00000187598 830 ntTSL 5 BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Ly6c2-203ENSMUST00000188214 638 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm36946-201ENSMUST00000192706 435 ntBASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm38102-202ENSMUST00000196428 174 ntTSL 5 BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm43786-202ENSMUST00000202157 616 ntTSL 3 BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Olfr906-202ENSMUST00000214344 3775 ntAPPRIS P1 TSL 3 BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Xpo1-204ENSMUST00000109551 4906 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Mcf2-203ENSMUST00000101531 3671 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Satl1-201ENSMUST00000026601 2412 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 9830107B12Rik-201ENSMUST00000063481 3639 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
Rnf40Q3U319 Gm37639-201ENSMUST00000191623 2785 ntBASIC6.09□□□□□ -1.43
Rnf40Q3U319 Dnajc13-203ENSMUST00000186788 6747 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
Rnf40Q3U319 Speer4a-201ENSMUST00000079447 2980 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
Rnf40Q3U319 AC112972.2-201ENSMUST00000228702 2210 ntBASIC6.09□□□□□ -1.44
Rnf40Q3U319 Olfr535-204ENSMUST00000214296 5120 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.44
Rnf40Q3U319 Olfr824-203ENSMUST00000215217 3619 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
Rnf40Q3U319 Ktn1-207ENSMUST00000186761 3902 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
Rnf40Q3U319 Gm45554-203ENSMUST00000211410 2137 ntTSL 5 BASIC6.08□□□□□ -1.44
Rnf40Q3U319 Rnd3-201ENSMUST00000017288 2828 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
Rnf40Q3U319 Obox4-ps28-201ENSMUST00000175654 1362 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 76,532 protein–RNA pairs in 80.8 ms