Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Vps28Q9D1C8 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.79■□□□□ 0.44
Vps28Q9D1C8 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Vps28Q9D1C8 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Gm3375-201ENSMUST00000203929 796 ntBASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Vps28Q9D1C8 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Vps28Q9D1C8 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Vps28Q9D1C8 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Vps28Q9D1C8 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Vps28Q9D1C8 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Vps28Q9D1C8 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Vps28Q9D1C8 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.76■□□□□ 0.43
Vps28Q9D1C8 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Gm6598-201ENSMUST00000202719 2615 ntBASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.76■□□□□ 0.43
Vps28Q9D1C8 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Gm30025-201ENSMUST00000218555 728 ntBASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Vps28Q9D1C8 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms