Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Gm11927-201ENSMUST00000118472 759 ntBASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Gm11643-201ENSMUST00000119578 864 ntBASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC19.39■□□□□ 0.69
Smc1aQ9CU62 AC130671.1-201ENSMUST00000227384 1237 ntBASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smc1aQ9CU62 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
Smc1aQ9CU62 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Smc1aQ9CU62 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Gm37194-201ENSMUST00000193092 3031 ntBASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Smc1aQ9CU62 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Smc1aQ9CU62 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Smc1aQ9CU62 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms