Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC18.32■□□□□ 0.52
Clp1Q99LI9 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Clp1Q99LI9 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clp1Q99LI9 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clp1Q99LI9 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC18.32■□□□□ 0.52
Clp1Q99LI9 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clp1Q99LI9 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clp1Q99LI9 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Clp1Q99LI9 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.32■□□□□ 0.52
Clp1Q99LI9 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clp1Q99LI9 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Clp1Q99LI9 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC18.32■□□□□ 0.52
Clp1Q99LI9 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Clp1Q99LI9 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Clp1Q99LI9 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC18.31■□□□□ 0.52
Clp1Q99LI9 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
Clp1Q99LI9 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Clp1Q99LI9 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Clp1Q99LI9 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Clp1Q99LI9 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Clp1Q99LI9 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.3■□□□□ 0.52
Clp1Q99LI9 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Gm10616-201ENSMUST00000205285 2127 ntBASIC18.3■□□□□ 0.52
Clp1Q99LI9 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Clp1Q99LI9 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.29■□□□□ 0.52
Clp1Q99LI9 Idnk-204ENSMUST00000226010 1898 ntBASIC18.29■□□□□ 0.52
Clp1Q99LI9 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Gm28659-201ENSMUST00000188013 759 ntBASIC18.29■□□□□ 0.52
Clp1Q99LI9 Gm43514-201ENSMUST00000198852 424 ntBASIC18.29■□□□□ 0.52
Clp1Q99LI9 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Clp1Q99LI9 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clp1Q99LI9 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Clp1Q99LI9 Golph3-205ENSMUST00000228671 2842 ntBASIC18.27■□□□□ 0.52
Clp1Q99LI9 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clp1Q99LI9 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clp1Q99LI9 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clp1Q99LI9 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clp1Q99LI9 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clp1Q99LI9 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC18.27■□□□□ 0.52
Clp1Q99LI9 Gm27459-201ENSMUST00000184860 107 ntBASIC18.27■□□□□ 0.52
Clp1Q99LI9 Shisa5-218ENSMUST00000200515 1005 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Clp1Q99LI9 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clp1Q99LI9 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
Clp1Q99LI9 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.27■□□□□ 0.51
Clp1Q99LI9 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Clp1Q99LI9 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Clp1Q99LI9 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Clp1Q99LI9 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Clp1Q99LI9 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Clp1Q99LI9 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Clp1Q99LI9 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Clp1Q99LI9 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Clp1Q99LI9 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC18.26■□□□□ 0.51
Clp1Q99LI9 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Clp1Q99LI9 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms