Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Lsm1Q8VC85 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Lsm1Q8VC85 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Lsm1Q8VC85 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Lsm1Q8VC85 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Gm10461-201ENSMUST00000202073 4786 ntBASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Gm45560-201ENSMUST00000211492 1472 ntBASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Lsm1Q8VC85 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
Lsm1Q8VC85 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Lsm1Q8VC85 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Gm12896-201ENSMUST00000118430 226 ntBASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 AC163280.1-201ENSMUST00000228194 1100 ntBASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Gm19721-201ENSMUST00000195284 1764 ntBASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Lsm1Q8VC85 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Gm16499-203ENSMUST00000204633 2177 ntBASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Gm11249-201ENSMUST00000117071 859 ntBASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Gm21596-201ENSMUST00000178049 1316 ntBASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC16.63■□□□□ 0.25
Lsm1Q8VC85 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Gm6576-201ENSMUST00000169678 883 ntBASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Lsm1Q8VC85 Gm16401-202ENSMUST00000197463 2074 ntBASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Lsm1Q8VC85 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms