Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps53Q8CCB4 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
Vps53Q8CCB4 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Vps53Q8CCB4 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC20.22■□□□□ 0.83
Vps53Q8CCB4 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps53Q8CCB4 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC20.22■□□□□ 0.83
Vps53Q8CCB4 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC20.22■□□□□ 0.83
Vps53Q8CCB4 Gm43799-201ENSMUST00000201845 579 ntBASIC20.22■□□□□ 0.83
Vps53Q8CCB4 AC175538.1-201ENSMUST00000225343 1269 ntBASIC20.22■□□□□ 0.83
Vps53Q8CCB4 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps53Q8CCB4 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps53Q8CCB4 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Vps53Q8CCB4 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Vps53Q8CCB4 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
Vps53Q8CCB4 Gm37811-201ENSMUST00000192416 2601 ntBASIC20.22■□□□□ 0.83
Vps53Q8CCB4 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Gm10231-201ENSMUST00000181584 441 ntBASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Gm10175-202ENSMUST00000208752 441 ntBASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vps53Q8CCB4 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vps53Q8CCB4 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Vps53Q8CCB4 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Vps53Q8CCB4 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Vps53Q8CCB4 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Vps53Q8CCB4 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Vps53Q8CCB4 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Vps53Q8CCB4 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Vps53Q8CCB4 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Vps53Q8CCB4 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
Vps53Q8CCB4 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Vps53Q8CCB4 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC20.19■□□□□ 0.82
Vps53Q8CCB4 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC20.18■□□□□ 0.82
Vps53Q8CCB4 Gm8969-201ENSMUST00000199694 526 ntBASIC20.18■□□□□ 0.82
Vps53Q8CCB4 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Vps53Q8CCB4 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps53Q8CCB4 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps53Q8CCB4 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps53Q8CCB4 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps53Q8CCB4 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps53Q8CCB4 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Vps53Q8CCB4 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Vps53Q8CCB4 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
Vps53Q8CCB4 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Vps53Q8CCB4 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps53Q8CCB4 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps53Q8CCB4 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps53Q8CCB4 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps53Q8CCB4 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps53Q8CCB4 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps53Q8CCB4 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Vps53Q8CCB4 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Vps53Q8CCB4 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps53Q8CCB4 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps53Q8CCB4 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vps53Q8CCB4 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Fcho2-208ENSMUST00000224992 2964 ntBASIC20.16■□□□□ 0.82
Vps53Q8CCB4 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms