Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ubfd1Q78JW9 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ubfd1Q78JW9 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Ubfd1Q78JW9 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Ubfd1Q78JW9 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Ubfd1Q78JW9 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Gm18101-201ENSMUST00000215769 548 ntBASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Ubfd1Q78JW9 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ubfd1Q78JW9 Gm19721-201ENSMUST00000195284 1764 ntBASIC16.89■□□□□ 0.3
Ubfd1Q78JW9 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.3
Ubfd1Q78JW9 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ubfd1Q78JW9 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ubfd1Q78JW9 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Ubfd1Q78JW9 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Ubfd1Q78JW9 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Gm22697-201ENSMUST00000175194 63 ntBASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC16.89■□□□□ 0.29
Ubfd1Q78JW9 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Fam105a-203ENSMUST00000226170 3043 ntBASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC16.88■□□□□ 0.29
Ubfd1Q78JW9 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Gm7370-201ENSMUST00000219471 767 ntBASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 AC122335.2-201ENSMUST00000213901 6181 ntBASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Ubfd1Q78JW9 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms