Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx55Q6ZPL9 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Ddx55Q6ZPL9 Gm27459-201ENSMUST00000184860 107 ntBASIC19.79■□□□□ 0.76
Ddx55Q6ZPL9 Gm43514-201ENSMUST00000198852 424 ntBASIC19.79■□□□□ 0.76
Ddx55Q6ZPL9 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx55Q6ZPL9 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Ddx55Q6ZPL9 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx55Q6ZPL9 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Ddx55Q6ZPL9 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx55Q6ZPL9 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx55Q6ZPL9 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ddx55Q6ZPL9 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
Ddx55Q6ZPL9 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 Fst-202ENSMUST00000223640 2612 ntBASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 AC124569.2-201ENSMUST00000225998 818 ntBASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Ddx55Q6ZPL9 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Ddx55Q6ZPL9 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Gm6443-201ENSMUST00000203599 874 ntBASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Alas2-201ENSMUST00000066337 2037 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Ddx55Q6ZPL9 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 Gm5864-201ENSMUST00000202263 970 ntBASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 Gm43231-201ENSMUST00000202960 2258 ntBASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ddx55Q6ZPL9 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Gm13884-201ENSMUST00000118103 829 ntBASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Gm12895-201ENSMUST00000122214 226 ntBASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Mir8098-201ENSMUST00000184011 137 ntBASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ddx55Q6ZPL9 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx55Q6ZPL9 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx55Q6ZPL9 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx55Q6ZPL9 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx55Q6ZPL9 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
Ddx55Q6ZPL9 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx55Q6ZPL9 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx55Q6ZPL9 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Ddx55Q6ZPL9 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx55Q6ZPL9 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx55Q6ZPL9 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ddx55Q6ZPL9 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx55Q6ZPL9 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx55Q6ZPL9 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ddx55Q6ZPL9 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms