Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 AC121961.1-201ENSMUST00000218594 1779 ntBASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Hmgb4Q6P8W9 Gm45906-201ENSMUST00000208911 1430 ntBASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.16■□□□□ 0.5
Hmgb4Q6P8W9 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Gm18959-201ENSMUST00000208954 655 ntBASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Hmgb4Q6P8W9 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Hmgb4Q6P8W9 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Hmgb4Q6P8W9 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Hmgb4Q6P8W9 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Hmgb4Q6P8W9 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Hmgb4Q6P8W9 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb4Q6P8W9 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms