Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Gm44549-201ENSMUST00000208351 577 ntBASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Sh3rf1Q69ZI1 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Sh3rf1Q69ZI1 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
Sh3rf1Q69ZI1 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Sh3rf1Q69ZI1 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Sh3rf1Q69ZI1 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Sh3rf1Q69ZI1 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Sh3rf1Q69ZI1 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Sh3rf1Q69ZI1 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.58■□□□□ 0.41
Sh3rf1Q69ZI1 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
Sh3rf1Q69ZI1 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC17.58■□□□□ 0.4
Sh3rf1Q69ZI1 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC17.58■□□□□ 0.4
Sh3rf1Q69ZI1 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Sh3rf1Q69ZI1 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.58■□□□□ 0.4
Sh3rf1Q69ZI1 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sh3rf1Q69ZI1 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sh3rf1Q69ZI1 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Sh3rf1Q69ZI1 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC17.58■□□□□ 0.4
Sh3rf1Q69ZI1 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Sh3rf1Q69ZI1 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
Sh3rf1Q69ZI1 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Gm21596-201ENSMUST00000178049 1316 ntBASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Gm2399-201ENSMUST00000104944 225 ntBASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Gm11249-201ENSMUST00000117071 859 ntBASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Gm29241-201ENSMUST00000189260 1096 ntBASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Sh3rf1Q69ZI1 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Sh3rf1Q69ZI1 Senp2-201ENSMUST00000023561 4499 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC17.55■□□□□ 0.4
Sh3rf1Q69ZI1 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms