Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC21.31■■□□□ 1
Trim27Q62158 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC21.31■■□□□ 1
Trim27Q62158 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Trim27Q62158 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim27Q62158 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Trim27Q62158 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC21.31■■□□□ 1
Trim27Q62158 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Trim27Q62158 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim27Q62158 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim27Q62158 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim27Q62158 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim27Q62158 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
Trim27Q62158 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim27Q62158 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
Trim27Q62158 Gm12085-201ENSMUST00000119263 940 ntBASIC21.3■■□□□ 1
Trim27Q62158 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim27Q62158 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC21.3■■□□□ 1
Trim27Q62158 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC21.3■■□□□ 1
Trim27Q62158 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trim27Q62158 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim27Q62158 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Trim27Q62158 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim27Q62158 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
Trim27Q62158 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trim27Q62158 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Gm715-201ENSMUST00000117865 831 ntBASIC21.29■■□□□ 1
Trim27Q62158 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC21.29■■□□□ 1
Trim27Q62158 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Trim27Q62158 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC21.29■■□□□ 1
Trim27Q62158 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC21.29■■□□□ 1
Trim27Q62158 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Trim27Q62158 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC21.28■■□□□ 1
Trim27Q62158 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC21.28■■□□□ 1
Trim27Q62158 AC112142.1-201ENSMUST00000228796 918 ntBASIC21.28■■□□□ 1
Trim27Q62158 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Trim27Q62158 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Trim27Q62158 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Trim27Q62158 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Trim27Q62158 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Trim27Q62158 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC21.27■■□□□ 1
Trim27Q62158 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trim27Q62158 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
Trim27Q62158 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC21.27■■□□□ 1
Trim27Q62158 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trim27Q62158 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
Trim27Q62158 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trim27Q62158 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trim27Q62158 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Trim27Q62158 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trim27Q62158 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim27Q62158 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim27Q62158 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim27Q62158 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
Trim27Q62158 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC21.26■□□□□ 0.99
Trim27Q62158 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim27Q62158 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC21.26■□□□□ 0.99
Trim27Q62158 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC21.26■□□□□ 0.99
Trim27Q62158 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim27Q62158 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim27Q62158 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim27Q62158 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC21.26■□□□□ 0.99
Trim27Q62158 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim27Q62158 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim27Q62158 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim27Q62158 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim27Q62158 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Trim27Q62158 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim27Q62158 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC21.25■□□□□ 0.99
Trim27Q62158 Gm38027-201ENSMUST00000192315 235 ntBASIC21.25■□□□□ 0.99
Trim27Q62158 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim27Q62158 Spcs1-207ENSMUST00000228767 1008 ntBASIC21.25■□□□□ 0.99
Trim27Q62158 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim27Q62158 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim27Q62158 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim27Q62158 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim27Q62158 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 57.1 ms