Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Six4Q61321 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Six4Q61321 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
Six4Q61321 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Six4Q61321 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.52■□□□□ 0.4
Six4Q61321 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Six4Q61321 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Six4Q61321 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Six4Q61321 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Six4Q61321 Gm5417-201ENSMUST00000079706 384 ntBASIC17.52■□□□□ 0.4
Six4Q61321 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Six4Q61321 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Six4Q61321 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Six4Q61321 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Six4Q61321 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Six4Q61321 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.52■□□□□ 0.39
Six4Q61321 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Six4Q61321 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Six4Q61321 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Six4Q61321 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Six4Q61321 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Six4Q61321 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Six4Q61321 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Six4Q61321 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Six4Q61321 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Six4Q61321 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC17.51■□□□□ 0.39
Six4Q61321 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Six4Q61321 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC17.51■□□□□ 0.39
Six4Q61321 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Six4Q61321 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Six4Q61321 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Six4Q61321 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Six4Q61321 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Six4Q61321 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Six4Q61321 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Six4Q61321 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC17.51■□□□□ 0.39
Six4Q61321 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Six4Q61321 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.5■□□□□ 0.39
Six4Q61321 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Six4Q61321 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Six4Q61321 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Six4Q61321 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Six4Q61321 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Six4Q61321 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.5■□□□□ 0.39
Six4Q61321 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Six4Q61321 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Six4Q61321 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Six4Q61321 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Six4Q61321 Gm20472-201ENSMUST00000174403 1240 ntBASIC17.5■□□□□ 0.39
Six4Q61321 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Six4Q61321 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Six4Q61321 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Six4Q61321 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
Six4Q61321 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC17.5■□□□□ 0.39
Six4Q61321 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Six4Q61321 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
Six4Q61321 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 Gm7638-201ENSMUST00000121348 967 ntBASIC17.49■□□□□ 0.39
Six4Q61321 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Six4Q61321 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.48■□□□□ 0.39
Six4Q61321 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC17.48■□□□□ 0.39
Six4Q61321 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Six4Q61321 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.48■□□□□ 0.39
Six4Q61321 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC17.48■□□□□ 0.39
Six4Q61321 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Six4Q61321 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Six4Q61321 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Six4Q61321 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Six4Q61321 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Six4Q61321 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Six4Q61321 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Six4Q61321 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.47■□□□□ 0.39
Six4Q61321 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Six4Q61321 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Six4Q61321 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Six4Q61321 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Six4Q61321 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.47■□□□□ 0.39
Six4Q61321 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Six4Q61321 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms