Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Col27a1Q5QNQ9 Gm19721-201ENSMUST00000195284 1764 ntBASIC16.83■□□□□ 0.28
Col27a1Q5QNQ9 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Col27a1Q5QNQ9 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Col27a1Q5QNQ9 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Phf7-203ENSMUST00000226565 1971 ntBASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Gm12260-201ENSMUST00000122447 411 ntBASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Col27a1Q5QNQ9 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Gm9885-202ENSMUST00000186234 2209 ntBASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Col27a1Q5QNQ9 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Gm13186-201ENSMUST00000118031 316 ntBASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Gm37374-201ENSMUST00000194954 1829 ntBASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Gm15467-201ENSMUST00000120582 445 ntBASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Gm2756-201ENSMUST00000195851 400 ntBASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Col27a1Q5QNQ9 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Gm15165-201ENSMUST00000118140 502 ntBASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Gm27000-201ENSMUST00000182943 842 ntBASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Col27a1Q5QNQ9 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col27a1Q5QNQ9 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col27a1Q5QNQ9 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col27a1Q5QNQ9 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col27a1Q5QNQ9 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Col27a1Q5QNQ9 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.78■□□□□ 0.28
Col27a1Q5QNQ9 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col27a1Q5QNQ9 Gm7230-201ENSMUST00000173026 815 ntBASIC16.78■□□□□ 0.28
Col27a1Q5QNQ9 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Col27a1Q5QNQ9 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC16.78■□□□□ 0.28
Col27a1Q5QNQ9 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms