Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Gm16042-201ENSMUST00000204813 1247 ntBASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Upf3bQ3ULL6 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
Upf3bQ3ULL6 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
Upf3bQ3ULL6 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Upf3bQ3ULL6 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Gm19439-201ENSMUST00000198195 2273 ntBASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Gm24841-201ENSMUST00000158676 357 ntBASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Upf3bQ3ULL6 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Gm12085-201ENSMUST00000119263 940 ntBASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 Timm23-208ENSMUST00000226683 750 ntBASIC18.52■□□□□ 0.56
Upf3bQ3ULL6 AC156016.1-201ENSMUST00000227190 1035 ntBASIC18.52■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms