Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Gm27389-201ENSMUST00000183622 195 ntBASIC15.01□□□□□ -0.01
Nkx3-1P97436 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Nkx3-1P97436 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC15□□□□□ -0.01
Nkx3-1P97436 Gm8258-201ENSMUST00000055593 1449 ntBASIC15□□□□□ -0.01
Nkx3-1P97436 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Nkx3-1P97436 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Nkx3-1P97436 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC15□□□□□ -0.01
Nkx3-1P97436 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nkx3-1P97436 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
Nkx3-1P97436 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC15□□□□□ -0.01
Nkx3-1P97436 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nkx3-1P97436 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
Nkx3-1P97436 Gm38342-201ENSMUST00000195710 2980 ntBASIC15□□□□□ -0.01
Nkx3-1P97436 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC15□□□□□ -0.01
Nkx3-1P97436 Gm21559-201ENSMUST00000220638 855 ntBASIC15□□□□□ -0.01
Nkx3-1P97436 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nkx3-1P97436 Gm8587-201ENSMUST00000076538 843 ntBASIC15□□□□□ -0.01
Nkx3-1P97436 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nkx3-1P97436 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nkx3-1P97436 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nkx3-1P97436 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC15□□□□□ -0.01
Nkx3-1P97436 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nkx3-1P97436 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Nkx3-1P97436 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
Nkx3-1P97436 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Nkx3-1P97436 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Spsb2-203ENSMUST00000112473 1322 ntBASIC14.99□□□□□ -0.01
Nkx3-1P97436 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Gm37025-201ENSMUST00000195159 829 ntBASIC14.99□□□□□ -0.01
Nkx3-1P97436 Gm9731-201ENSMUST00000209480 747 ntBASIC14.99□□□□□ -0.01
Nkx3-1P97436 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
Nkx3-1P97436 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Gm7284-201ENSMUST00000131667 944 ntBASIC14.98□□□□□ -0.01
Nkx3-1P97436 Ank2-226ENSMUST00000189368 339 ntBASIC14.98□□□□□ -0.01
Nkx3-1P97436 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
Nkx3-1P97436 Gm43213-201ENSMUST00000151866 1790 ntBASIC14.98□□□□□ -0.01
Nkx3-1P97436 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Nkx3-1P97436 Gm9103-201ENSMUST00000119371 405 ntBASIC14.97□□□□□ -0.01
Nkx3-1P97436 Gm17661-201ENSMUST00000170317 270 ntBASIC14.97□□□□□ -0.01
Nkx3-1P97436 Gm27741-201ENSMUST00000185060 237 ntBASIC14.97□□□□□ -0.01
Nkx3-1P97436 Il3ra-202ENSMUST00000223589 738 ntBASIC14.97□□□□□ -0.01
Nkx3-1P97436 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Nkx3-1P97436 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
Nkx3-1P97436 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Nkx3-1P97436 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Nkx3-1P97436 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Nkx3-1P97436 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Nkx3-1P97436 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Nkx3-1P97436 Gm43182-201ENSMUST00000199476 2528 ntBASIC14.97□□□□□ -0.01
Nkx3-1P97436 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms