Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rfx1P48377 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rfx1P48377 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
Rfx1P48377 AC140264.2-202ENSMUST00000218746 817 ntBASIC20.78■□□□□ 0.92
Rfx1P48377 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rfx1P48377 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Rfx1P48377 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rfx1P48377 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rfx1P48377 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Rfx1P48377 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Rfx1P48377 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
Rfx1P48377 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rfx1P48377 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rfx1P48377 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rfx1P48377 Gm28265-201ENSMUST00000188201 2319 ntBASIC20.77■□□□□ 0.92
Rfx1P48377 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Rfx1P48377 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Rfx1P48377 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rfx1P48377 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Rfx1P48377 Gm10033-202ENSMUST00000211874 928 ntBASIC20.77■□□□□ 0.92
Rfx1P48377 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Rfx1P48377 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Rfx1P48377 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rfx1P48377 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rfx1P48377 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC20.76■□□□□ 0.91
Rfx1P48377 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rfx1P48377 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rfx1P48377 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rfx1P48377 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
Rfx1P48377 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Rfx1P48377 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rfx1P48377 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Rfx1P48377 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC20.76■□□□□ 0.91
Rfx1P48377 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Rfx1P48377 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
Rfx1P48377 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Rfx1P48377 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Cxcl14-202ENSMUST00000224801 1467 ntBASIC20.75■□□□□ 0.91
Rfx1P48377 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Rfx1P48377 Haglr-201ENSMUST00000100000 2085 ntBASIC20.74■□□□□ 0.91
Rfx1P48377 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC20.74■□□□□ 0.91
Rfx1P48377 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Rfx1P48377 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Rfx1P48377 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Rfx1P48377 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Mir8112-201ENSMUST00000184382 131 ntBASIC20.73■□□□□ 0.91
Rfx1P48377 Gm7291-201ENSMUST00000199147 382 ntBASIC20.73■□□□□ 0.91
Rfx1P48377 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.73■□□□□ 0.91
Rfx1P48377 Gm29791-202ENSMUST00000207888 369 ntBASIC20.73■□□□□ 0.91
Rfx1P48377 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 AC108858.1-201ENSMUST00000228461 1498 ntBASIC20.73■□□□□ 0.91
Rfx1P48377 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Gm16401-202ENSMUST00000197463 2074 ntBASIC20.73■□□□□ 0.91
Rfx1P48377 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Rfx1P48377 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
Rfx1P48377 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC20.72■□□□□ 0.91
Rfx1P48377 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.72■□□□□ 0.91
Rfx1P48377 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
Rfx1P48377 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms