Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx2P43241 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx2P43241 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
Cdx2P43241 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Cdx2P43241 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx2P43241 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC16.49■□□□□ 0.23
Cdx2P43241 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Cdx2P43241 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx2P43241 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx2P43241 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC16.49■□□□□ 0.23
Cdx2P43241 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC16.49■□□□□ 0.23
Cdx2P43241 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx2P43241 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx2P43241 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx2P43241 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Cdx2P43241 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Cdx2P43241 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC16.48■□□□□ 0.23
Cdx2P43241 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.48■□□□□ 0.23
Cdx2P43241 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Cdx2P43241 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 Olfr129-201ENSMUST00000122318 993 ntBASIC16.48■□□□□ 0.23
Cdx2P43241 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC16.48■□□□□ 0.23
Cdx2P43241 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC16.48■□□□□ 0.23
Cdx2P43241 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 AC122351.1-201ENSMUST00000220467 126 ntBASIC16.48■□□□□ 0.23
Cdx2P43241 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC16.48■□□□□ 0.23
Cdx2P43241 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Cdx2P43241 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
Cdx2P43241 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Cdx2P43241 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC16.48■□□□□ 0.23
Cdx2P43241 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx2P43241 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx2P43241 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx2P43241 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx2P43241 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx2P43241 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC16.47■□□□□ 0.23
Cdx2P43241 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx2P43241 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx2P43241 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx2P43241 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx2P43241 Idnk-204ENSMUST00000226010 1898 ntBASIC16.47■□□□□ 0.23
Cdx2P43241 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
Cdx2P43241 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Cdx2P43241 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC16.47■□□□□ 0.23
Cdx2P43241 AC154855.1-201ENSMUST00000227353 1458 ntBASIC16.47■□□□□ 0.23
Cdx2P43241 Gm43231-201ENSMUST00000202960 2258 ntBASIC16.47■□□□□ 0.23
Cdx2P43241 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx2P43241 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx2P43241 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx2P43241 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx2P43241 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Cdx2P43241 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC16.46■□□□□ 0.23
Cdx2P43241 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx2P43241 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Cdx2P43241 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx2P43241 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx2P43241 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC16.46■□□□□ 0.23
Cdx2P43241 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx2P43241 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC16.46■□□□□ 0.23
Cdx2P43241 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx2P43241 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC16.46■□□□□ 0.23
Cdx2P43241 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC16.46■□□□□ 0.23
Cdx2P43241 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx2P43241 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cdx2P43241 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC16.45■□□□□ 0.22
Cdx2P43241 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx2P43241 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC16.45■□□□□ 0.22
Cdx2P43241 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx2P43241 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Cdx2P43241 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
Cdx2P43241 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC16.45■□□□□ 0.22
Cdx2P43241 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC16.45■□□□□ 0.22
Cdx2P43241 Mzt1-203ENSMUST00000227948 952 ntBASIC16.45■□□□□ 0.22
Cdx2P43241 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Cdx2P43241 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.45■□□□□ 0.22
Cdx2P43241 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx2P43241 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC16.45■□□□□ 0.22
Cdx2P43241 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx2P43241 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx2P43241 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cdx2P43241 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
Cdx2P43241 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx2P43241 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx2P43241 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx2P43241 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Cdx2P43241 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx2P43241 Gm34391-201ENSMUST00000203706 907 ntBASIC16.44■□□□□ 0.22
Cdx2P43241 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cdx2P43241 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms