Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RaraP11416 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RaraP11416 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC18.8■□□□□ 0.6
RaraP11416 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RaraP11416 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RaraP11416 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RaraP11416 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.8■□□□□ 0.6
RaraP11416 Mir6349-201ENSMUST00000184059 97 ntBASIC18.8■□□□□ 0.6
RaraP11416 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC18.8■□□□□ 0.6
RaraP11416 Gm10138-203ENSMUST00000206952 366 ntBASIC18.8■□□□□ 0.6
RaraP11416 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RaraP11416 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RaraP11416 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RaraP11416 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RaraP11416 AC122335.2-201ENSMUST00000213901 6181 ntBASIC18.8■□□□□ 0.6
RaraP11416 Gm10461-201ENSMUST00000202073 4786 ntBASIC18.8■□□□□ 0.6
RaraP11416 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RaraP11416 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RaraP11416 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RaraP11416 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RaraP11416 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RaraP11416 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RaraP11416 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RaraP11416 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RaraP11416 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RaraP11416 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC18.79■□□□□ 0.6
RaraP11416 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.79■□□□□ 0.6
RaraP11416 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC18.79■□□□□ 0.6
RaraP11416 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RaraP11416 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RaraP11416 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RaraP11416 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RaraP11416 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RaraP11416 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RaraP11416 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RaraP11416 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
RaraP11416 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
RaraP11416 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RaraP11416 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RaraP11416 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC18.78■□□□□ 0.6
RaraP11416 Gm11643-201ENSMUST00000119578 864 ntBASIC18.78■□□□□ 0.6
RaraP11416 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RaraP11416 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RaraP11416 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RaraP11416 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RaraP11416 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RaraP11416 Gm45560-201ENSMUST00000211492 1472 ntBASIC18.77■□□□□ 0.6
RaraP11416 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RaraP11416 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RaraP11416 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
RaraP11416 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RaraP11416 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC18.77■□□□□ 0.6
RaraP11416 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RaraP11416 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RaraP11416 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
RaraP11416 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC18.77■□□□□ 0.6
RaraP11416 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RaraP11416 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RaraP11416 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RaraP11416 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
RaraP11416 Gm11249-201ENSMUST00000117071 859 ntBASIC18.77■□□□□ 0.6
RaraP11416 Gm12896-201ENSMUST00000118430 226 ntBASIC18.77■□□□□ 0.6
RaraP11416 Gm15375-201ENSMUST00000119510 849 ntBASIC18.77■□□□□ 0.6
RaraP11416 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
RaraP11416 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RaraP11416 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC18.77■□□□□ 0.6
RaraP11416 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.77■□□□□ 0.6
RaraP11416 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
RaraP11416 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
RaraP11416 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
RaraP11416 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RaraP11416 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RaraP11416 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RaraP11416 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
RaraP11416 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RaraP11416 Gm45774-201ENSMUST00000211992 2665 ntBASIC18.76■□□□□ 0.59
RaraP11416 Alkbh1-212ENSMUST00000185301 408 ntBASIC18.76■□□□□ 0.59
RaraP11416 Gm3807-201ENSMUST00000193520 1168 ntBASIC18.76■□□□□ 0.59
RaraP11416 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.76■□□□□ 0.59
RaraP11416 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RaraP11416 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RaraP11416 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.75■□□□□ 0.59
RaraP11416 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
RaraP11416 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RaraP11416 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RaraP11416 Gm16401-202ENSMUST00000197463 2074 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms