Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col1a1P11087 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Col1a1P11087 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Col1a1P11087 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col1a1P11087 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col1a1P11087 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col1a1P11087 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
Col1a1P11087 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC20.34■□□□□ 0.85
Col1a1P11087 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Col1a1P11087 Npw-202ENSMUST00000213213 531 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Col1a1P11087 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
Col1a1P11087 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC20.34■□□□□ 0.85
Col1a1P11087 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Col1a1P11087 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Col1a1P11087 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Col1a1P11087 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col1a1P11087 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Col1a1P11087 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Col1a1P11087 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
Col1a1P11087 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Col1a1P11087 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC20.33■□□□□ 0.84
Col1a1P11087 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col1a1P11087 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col1a1P11087 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col1a1P11087 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
Col1a1P11087 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col1a1P11087 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Col1a1P11087 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col1a1P11087 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col1a1P11087 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC20.32■□□□□ 0.84
Col1a1P11087 Gm25925-201ENSMUST00000158314 306 ntBASIC20.32■□□□□ 0.84
Col1a1P11087 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
Col1a1P11087 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col1a1P11087 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Col1a1P11087 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col1a1P11087 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Col1a1P11087 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col1a1P11087 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col1a1P11087 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Col1a1P11087 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Col1a1P11087 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Col1a1P11087 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC20.32■□□□□ 0.84
Col1a1P11087 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC20.31■□□□□ 0.84
Col1a1P11087 Gm15372-201ENSMUST00000120729 834 ntBASIC20.31■□□□□ 0.84
Col1a1P11087 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 Gm12359-202ENSMUST00000141696 713 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 Gm12359-203ENSMUST00000153181 680 ntTSL 3 BASIC20.31■□□□□ 0.84
Col1a1P11087 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC20.31■□□□□ 0.84
Col1a1P11087 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 Gm18733-201ENSMUST00000173950 856 ntBASIC20.31■□□□□ 0.84
Col1a1P11087 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC20.31■□□□□ 0.84
Col1a1P11087 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Col1a1P11087 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Col1a1P11087 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Col1a1P11087 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Col1a1P11087 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col1a1P11087 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC20.3■□□□□ 0.84
Col1a1P11087 Gm38948-201ENSMUST00000210035 688 ntTSL 3 BASIC20.3■□□□□ 0.84
Col1a1P11087 AC159301.1-201ENSMUST00000225130 1182 ntBASIC20.3■□□□□ 0.84
Col1a1P11087 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
Col1a1P11087 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Col1a1P11087 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col1a1P11087 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col1a1P11087 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col1a1P11087 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
Col1a1P11087 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col1a1P11087 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col1a1P11087 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col1a1P11087 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC20.3■□□□□ 0.84
Col1a1P11087 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC20.3■□□□□ 0.84
Col1a1P11087 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Col1a1P11087 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col1a1P11087 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Col1a1P11087 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col1a1P11087 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col1a1P11087 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC20.29■□□□□ 0.84
Col1a1P11087 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.29■□□□□ 0.84
Col1a1P11087 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Col1a1P11087 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col1a1P11087 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col1a1P11087 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Col1a1P11087 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 Tnnt1-203ENSMUST00000108587 1059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC20.28■□□□□ 0.84
Col1a1P11087 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Col1a1P11087 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Col1a1P11087 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC20.28■□□□□ 0.84
Col1a1P11087 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms