Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Col3a1P08121 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Col3a1P08121 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC20.77■□□□□ 0.92
Col3a1P08121 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Col3a1P08121 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Col3a1P08121 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Col3a1P08121 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
Col3a1P08121 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Col3a1P08121 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Col3a1P08121 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC20.76■□□□□ 0.91
Col3a1P08121 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC20.76■□□□□ 0.91
Col3a1P08121 Gm14464-201ENSMUST00000119658 1254 ntBASIC20.76■□□□□ 0.91
Col3a1P08121 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.76■□□□□ 0.91
Col3a1P08121 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Col3a1P08121 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col3a1P08121 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC20.75■□□□□ 0.91
Col3a1P08121 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC20.75■□□□□ 0.91
Col3a1P08121 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col3a1P08121 AC130713.1-201ENSMUST00000228853 1096 ntBASIC20.75■□□□□ 0.91
Col3a1P08121 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col3a1P08121 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Col3a1P08121 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col3a1P08121 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Col3a1P08121 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Col3a1P08121 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col3a1P08121 AC125311.2-201ENSMUST00000227477 1940 ntBASIC20.75■□□□□ 0.91
Col3a1P08121 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Col3a1P08121 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col3a1P08121 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Col3a1P08121 AC159205.3-201ENSMUST00000224614 874 ntBASIC20.75■□□□□ 0.91
Col3a1P08121 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col3a1P08121 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Col3a1P08121 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col3a1P08121 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col3a1P08121 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col3a1P08121 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col3a1P08121 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Col3a1P08121 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col3a1P08121 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col3a1P08121 Gm27704-201ENSMUST00000185094 107 ntBASIC20.74■□□□□ 0.91
Col3a1P08121 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col3a1P08121 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col3a1P08121 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Col3a1P08121 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Col3a1P08121 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col3a1P08121 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col3a1P08121 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col3a1P08121 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col3a1P08121 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col3a1P08121 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Col3a1P08121 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC20.73■□□□□ 0.91
Col3a1P08121 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col3a1P08121 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col3a1P08121 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
Col3a1P08121 Cxcl14-202ENSMUST00000224801 1467 ntBASIC20.73■□□□□ 0.91
Col3a1P08121 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC20.73■□□□□ 0.91
Col3a1P08121 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Col3a1P08121 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col3a1P08121 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Col3a1P08121 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC20.72■□□□□ 0.91
Col3a1P08121 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col3a1P08121 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col3a1P08121 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col3a1P08121 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Col3a1P08121 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC20.72■□□□□ 0.91
Col3a1P08121 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col3a1P08121 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col3a1P08121 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col3a1P08121 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col3a1P08121 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Col3a1P08121 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC20.72■□□□□ 0.91
Col3a1P08121 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Col3a1P08121 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 Gm27357-201ENSMUST00000183754 135 ntBASIC20.71■□□□□ 0.91
Col3a1P08121 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Col3a1P08121 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC20.71■□□□□ 0.91
Col3a1P08121 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Col3a1P08121 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.71■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms