Protein–RNA interactions for Protein: O88834

Shd, SH2 domain-containing adapter protein D, mousemouse

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShdO88834 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ShdO88834 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ShdO88834 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ShdO88834 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ShdO88834 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
ShdO88834 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
ShdO88834 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ShdO88834 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
ShdO88834 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ShdO88834 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ShdO88834 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ShdO88834 Gm19721-201ENSMUST00000195284 1764 ntBASIC17.74■□□□□ 0.43
ShdO88834 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
ShdO88834 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC17.73■□□□□ 0.43
ShdO88834 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
ShdO88834 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC17.73■□□□□ 0.43
ShdO88834 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC17.73■□□□□ 0.43
ShdO88834 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC17.73■□□□□ 0.43
ShdO88834 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ShdO88834 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShdO88834 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShdO88834 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.72■□□□□ 0.43
ShdO88834 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShdO88834 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShdO88834 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
ShdO88834 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShdO88834 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
ShdO88834 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
ShdO88834 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShdO88834 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShdO88834 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
ShdO88834 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ShdO88834 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
ShdO88834 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ShdO88834 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShdO88834 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShdO88834 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShdO88834 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
ShdO88834 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShdO88834 AC124581.1-201ENSMUST00000225416 1399 ntBASIC17.71■□□□□ 0.43
ShdO88834 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC17.71■□□□□ 0.43
ShdO88834 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC17.71■□□□□ 0.43
ShdO88834 Gm15635-204ENSMUST00000208024 2539 ntBASIC17.71■□□□□ 0.43
ShdO88834 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShdO88834 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
ShdO88834 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShdO88834 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ShdO88834 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
ShdO88834 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
ShdO88834 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
ShdO88834 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.71■□□□□ 0.42
ShdO88834 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
ShdO88834 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC17.71■□□□□ 0.42
ShdO88834 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
ShdO88834 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
ShdO88834 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC17.71■□□□□ 0.42
ShdO88834 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
ShdO88834 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
ShdO88834 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShdO88834 Gm5898-201ENSMUST00000121016 2071 ntBASIC17.7■□□□□ 0.42
ShdO88834 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShdO88834 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ShdO88834 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ShdO88834 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShdO88834 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ShdO88834 Gm13181-201ENSMUST00000120117 1069 ntBASIC17.7■□□□□ 0.42
ShdO88834 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
ShdO88834 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.7■□□□□ 0.42
ShdO88834 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShdO88834 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShdO88834 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShdO88834 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
ShdO88834 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
ShdO88834 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
ShdO88834 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
ShdO88834 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC17.69■□□□□ 0.42
ShdO88834 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.69■□□□□ 0.42
ShdO88834 Mir1199-201ENSMUST00000117015 119 ntBASIC17.69■□□□□ 0.42
ShdO88834 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC17.69■□□□□ 0.42
ShdO88834 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
ShdO88834 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC17.69■□□□□ 0.42
ShdO88834 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC17.69■□□□□ 0.42
ShdO88834 AC153881.1-201ENSMUST00000214448 284 ntBASIC17.69■□□□□ 0.42
ShdO88834 AC175538.1-201ENSMUST00000225343 1269 ntBASIC17.69■□□□□ 0.42
ShdO88834 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms